Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O24
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 27 0.98
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 2.3
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 3.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 4.0
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 25 6.9
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 25 6.9
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 24 9.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 24 9.1
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 24 9.1
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 24 9.1
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 27.5 bits (58), Expect = 0.98
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 344 NDAMMKPVCPKHENRIYSMTKRTDYNIP 427
N ++ P HENRIYS+ D N P
Sbjct: 42 NATILGPAHSVHENRIYSLKIHCDANYP 69
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 2.3
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = -3
Query: 337 GADVFKTLRDKIPKHSF*VI*YLLKYSVPCC*TIKFSSIYTHIHRQRDLPHTANNNNGRN 158
G+++ ++ ++P + I +P C I FS++ + D+ NN+ G N
Sbjct: 13 GSEIVNDVKKRLPYYKSDWIDACHYRVLPACLNIYFSNLLPELAFALDMFAKTNNSFGVN 72
Query: 157 SSPILNYFTSVYFVIL 110
+ + SV F +L
Sbjct: 73 EVLLASVLGSVVFALL 88
>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 424 YIVISSFGHTIYSIFVLWTHRLHHGVVLTGADVFKTLR 311
Y + FGH+++ F +T +L ADVF L+
Sbjct: 122 YTKLEYFGHSLFFYFTAFTLSFKDRKILMQADVFFRLK 159
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 4.0
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 309 SRSVLNTSAPVKTTP-**SRCVQSTKIEY 392
S SVL TS PV +TP + C ST + Y
Sbjct: 535 STSVLYTSTPVTSTPLATTNCTTSTSVPY 563
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 24.6 bits (51), Expect = 6.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 162 RPLLLLAVWGRSLCLCICV*IEENFIVQQHGTEY 263
R LLLL VWG L +C + +F+ + Y
Sbjct: 401 RILLLLTVWGMIAALIVCA-VAFHFLPKDENGNY 433
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 6.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 247 NTVQNILTSIILPRNYALESCREVF*THQLQLKRRHDEAG 366
+T ++ILTSI L N+A S E + L L DE G
Sbjct: 318 HTSKDILTSIFLDVNFADSSALEAKLSDSLDLDVPIDELG 357
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.2 bits (50), Expect = 9.1
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -3
Query: 181 ANNNNGRNSSPILNYFTSVYFVIL*IILLKQHAFKLSSV 65
ANN R SPI F +YF + + FK SV
Sbjct: 1143 ANNITSRFPSPIRLKFEKIYFPCFLLAKKRYVGFKFESV 1181
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 360 FIMASF*LELMCSKHFATRFQSI 292
F+++ F +L+CS HF+ F SI
Sbjct: 128 FLLSLF--DLLCSHHFSVEFTSI 148
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 371 PKHENRIYSMTKRTDYNI 424
P H++RIYS T+ T + I
Sbjct: 747 PGHDSRIYSATEVTSFKI 764
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 122 FCNFIDNFTKTTCFQIVLSLIKEYAKAIKDHTATCKKNPR 3
F F+D F K + + I++ + A+ I + + C K R
Sbjct: 125 FRTFMDMFKKVSAYSIMIDNGNDAAEKIDEALSICYKKAR 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,992
Number of Sequences: 5004
Number of extensions: 34186
Number of successful extensions: 81
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -