Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O24
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016425-10|AAB65334.2|  336|Caenorhabditis elegans Serpentine r...    31   0.38 
Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    27   6.1  

>AF016425-10|AAB65334.2|  336|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 13 protein.
          Length = 336

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 427 WYIVISSFGHTIYSIFVLWTHRLHH 353
           W+I++ SF    YS F  WT RL H
Sbjct: 29  WFIMLPSFPIIGYSFFYCWTRRLFH 53


>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 378 CFGHTGFIMASF*LELMCSKHFATRFQSI 292
           C+  T  IM S+ L ++C KH A +  SI
Sbjct: 54  CYSFTVSIMKSYFLVILCYKHLAVKNLSI 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,575
Number of Sequences: 27780
Number of extensions: 187039
Number of successful extensions: 470
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)