Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O24
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   3.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   4.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   4.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   4.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   4.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   8.0  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 211 IHRQRDLPHTANNNNGRNSSPILNY 137
           IH   +  +  NNNN  N++   NY
Sbjct: 323 IHNNNNYKYNYNNNNYNNNNYNNNY 347


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 211 IHRQRDLPHTANNNNGRNSSPILNY 137
           IH   +  +  NNNN  N+   L Y
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 211 IHRQRDLPHTANNNNGRNSSPILNY 137
           IH   +  +  NNNN  N+   L Y
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 211 IHRQRDLPHTANNNNGRNSSPILNY 137
           IH   +  +  NNNN  N+   L Y
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKLYY 114


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 211 IHRQRDLPHTANNNNGRNSSPILNY 137
           IH   +  +  NNNN  N+   L Y
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKLYY 114


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 155 RVTSVIIVGCMGQVSLPMYMCINRRK 232
           R+   + VG   +  +P Y C  +RK
Sbjct: 40  RLKKCLTVGMRPECMVPEYQCAVKRK 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,584
Number of Sequences: 438
Number of extensions: 2414
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)