Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O23
         (195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    62   7e-12
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    62   7e-12
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    23   7.4  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    22   9.7  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 62.5 bits (145), Expect = 7e-12
 Identities = 30/42 (71%), Positives = 35/42 (83%)
 Frame = +1

Query: 70  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQPPV 195
           ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PV
Sbjct: 5   AQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPV 46


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 62.5 bits (145), Expect = 7e-12
 Identities = 30/42 (71%), Positives = 35/42 (83%)
 Frame = +1

Query: 70  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQPPV 195
           ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PV
Sbjct: 5   AQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPV 46


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 145 AYHQILRHRCSGRV 104
           A+++++ HRC G+V
Sbjct: 329 AFNRLMTHRCKGKV 342


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 90  SSYQKTLPEHLCRRI 134
           S+YQ+T  E++C+R+
Sbjct: 117 STYQRTRVENVCKRL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,542
Number of Sequences: 5004
Number of extensions: 9561
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)