Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O23
(195 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 62 6e-11
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 62 6e-11
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 62 6e-11
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 62 6e-11
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458... 26 3.7
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608... 25 6.4
02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055... 25 6.4
01_07_0141 - 41390483-41391448 25 6.4
01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800... 25 6.4
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 25 8.5
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 62.1 bits (144), Expect = 6e-11
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +1
Query: 76 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQPPV 195
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PV
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPV 48
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 62.1 bits (144), Expect = 6e-11
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +1
Query: 76 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQPPV 195
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PV
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPV 48
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 62.1 bits (144), Expect = 6e-11
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +1
Query: 76 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQPPV 195
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PV
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPV 74
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 62.1 bits (144), Expect = 6e-11
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +1
Query: 76 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQPPV 195
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PV
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPV 48
>05_07_0152 +
28044733-28045032,28045131-28045220,28045770-28045829,
28045912-28045977,28046161-28046226,28046330-28046405,
28046721-28046785,28046879-28046971,28047302-28047322,
28047600-28047692,28047939-28047998,28048157-28048222,
28048314-28048373,28048498-28048612,28048738-28048850
Length = 447
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 192 RWLAGKLFQHLSGTS*PITRFSDTDVQAEFSDMKI 88
RWLA TS + R +TD+ AE +D+K+
Sbjct: 239 RWLAKMNMMDDFETSLQVLRGFETDISAEVNDIKV 273
>07_01_0784 +
6083477-6083653,6086052-6086238,6086672-6086844,
6087520-6087678,6088677-6088817,6088880-6088941,
6089120-6089255,6091142-6091236,6091333-6091448,
6091538-6091667,6091757-6091811,6091889-6091930,
6092534-6092656
Length = 531
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 54 LLLLFIFFKCRRWTRA 7
++L+ + F CRRW RA
Sbjct: 19 VILVLVVFACRRWRRA 34
>02_05_1231 -
35104832-35105002,35105104-35105167,35105267-35105557,
35105755-35105999,35106410-35106489,35106890-35107006,
35107150-35108002,35108081-35108161
Length = 633
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 115 NICVGESGDRLTRAAKVLEQLTGQPPV 195
N+C+ E+ A VLE LT +P V
Sbjct: 118 NMCLAENSSTQNLADSVLESLTAKPDV 144
>01_07_0141 - 41390483-41391448
Length = 321
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 112 LNICVGESGDRLTRAAKVLEQL 177
+ +C G SGD L A+KV E L
Sbjct: 10 VGVCWGMSGDNLPPASKVTEML 31
>01_03_0134 +
12879254-12879596,12879689-12879796,12879905-12880000,
12880090-12880182,12880861-12880949,12881313-12881588,
12881656-12881808
Length = 385
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 102 SDMKIPHNIFRIVFRSLLLLFIF 34
S ++ PH +++F +LLLLF F
Sbjct: 18 SPLQSPHKQQQLIFAALLLLFFF 40
>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
Length = 1217
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 118 ICVGESGDRLTRAAKVLEQLTGQ 186
+CV + D +T A +LE +TG+
Sbjct: 242 VCVSDIYDEITLARDILESVTGE 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,737,364
Number of Sequences: 37544
Number of extensions: 67055
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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