Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O23
         (195 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...    78   1e-15
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...    77   1e-15
AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical ...    27   2.4  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    25   5.6  
Z77661-3|CAB01187.2|  264|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 36/42 (85%), Positives = 39/42 (92%)
 Frame = +1

Query: 70  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQPPV 195
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PV
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPV 56


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 36/41 (87%), Positives = 38/41 (92%)
 Frame = +1

Query: 73  KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQPPV 195
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PV
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPV 56


>AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical
           protein Y4C6B.2a protein.
          Length = 484

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 99  DMKIPHNIFRIVFRSLLLLFIFF 31
           DMK PH+  R +  + +++FIF+
Sbjct: 226 DMKKPHHFSRSIIIAFIIIFIFY 248


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
            protein protein8, isoform b protein.
          Length = 1780

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 182  PVSCSSTLAARVSLSPDSPTQMFRQ 108
            PVS ++    R++LS  SP Q F Q
Sbjct: 1213 PVSSATPQVKRIALSQSSPVQRFSQ 1237


>Z77661-3|CAB01187.2|  264|Caenorhabditis elegans Hypothetical
           protein F40G12.4 protein.
          Length = 264

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 75  KCYEESSYQKTLPEHLCRR 131
           +C E  S+ K  PE++C R
Sbjct: 207 RCLENRSFFKKTPEYMCER 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,911,679
Number of Sequences: 27780
Number of extensions: 56434
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)