Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O21
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 30 0.15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.80
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 1.4
SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces pomb... 26 1.8
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.6
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 5.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 5.6
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 25 5.6
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 5.6
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 24 7.4
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 24 7.4
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 24 9.8
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 24 9.8
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 24 9.8
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 29.9 bits (64), Expect = 0.15
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 231 LTQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLP-PTCSPPPQRS 67
L Q S +T S +S EI +R+ +N VPL ++ +R P P SPP R+
Sbjct: 743 LKQALSRPHTASTVVRSPSEINLTRQTSNRVPLLDMLNLNRAMSPTPIQSPPYVRT 798
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 0.80
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -3
Query: 150 NNTVPLSPLVRPDRTRLPPTCSPPPQRSRVRASLLPPTKKYYYNTTFTS 4
N+T P++P V P T T PP S S P TT TS
Sbjct: 296 NSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTS 344
Score = 27.5 bits (58), Expect = 0.80
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -3
Query: 150 NNTVPLSPLVRPDRTRLPPTCSPPPQRSRVRASLLPPTKKYYYNTTFTS 4
N+T P++P V P T T PP S S P TT TS
Sbjct: 350 NSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTS 398
Score = 23.8 bits (49), Expect = 9.8
Identities = 18/78 (23%), Positives = 30/78 (38%)
Frame = -3
Query: 270 TCSGVATGCVGDALTQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPT 91
T + +T + ++ + SSA T S S S C + + P P T
Sbjct: 79 TDTSASTPIITESTSSTSSASTTGS---SSSPLPSTSTSCTTSTSIPPTGGSSSLSTPIT 135
Query: 90 CSPPPQRSRVRASLLPPT 37
+ PP + + +PPT
Sbjct: 136 PTVPPTSTSSTSIPIPPT 153
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 1.4
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -3
Query: 234 ALTQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPTCSP---PPQRSR 64
A T VSS+ ++ + WA+ S P +P P + P + P P Q+S
Sbjct: 412 ASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPWQQPTQQSA 471
Query: 63 VRASLLPPTK 34
V+ S L P++
Sbjct: 472 VQPSNLVPSQ 481
>SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 119
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 68 LLCGGGEQVGGSRVRSGLTRGDNGTVLLHRLEFLISN 178
LLCGG +GG + SG +G + +L+ N
Sbjct: 49 LLCGGFNAIGGLAIASGDLTNGSGICTAWSIAYLMIN 85
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 24.6 bits (51), Expect = 5.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 174 EIKNSRRCNNTVPLSPLVRPDRTRLPPTCSP--PPQRS 67
+I+++ +VP + P LPP+ SP PP S
Sbjct: 101 QIRSADENQQSVPTVSIASPSTPELPPSSSPLLPPNGS 138
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 24.6 bits (51), Expect = 5.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 123 VRPDRTRLPPTCSPPPQRSRVRA 55
++P+ +LP T SPP S++RA
Sbjct: 646 IKPNEEKLPWTFSPPMVLSQLRA 668
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 24.6 bits (51), Expect = 5.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 132 SPLVRPDRTRLPPTCSPPP 76
SP ++P T PPT +P P
Sbjct: 720 SPAIKPQVTPAPPTPAPTP 738
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 24.6 bits (51), Expect = 5.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 120 RPDRTRLPPTCSPPPQRSRVRASLLPPTKKY 28
RP LPP PP +RS R S + KY
Sbjct: 16 RPPLRYLPPMDVPPEKRSTPRVSGIAKYLKY 46
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 24.6 bits (51), Expect = 5.6
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = +3
Query: 306 TDMYFSLISIIIDMNASLRRCNVRCR 383
TD+ S ++I+++MNA+++ + +C+
Sbjct: 317 TDLPPSFVNIVLEMNATIQSLSNQCQ 342
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 142 STVITSREAGPNATPSHLLPSSTEE 68
S +T ++ N TP P+STEE
Sbjct: 20 SVELTDTKSSDNVTPKQKSPNSTEE 44
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 24.2 bits (50), Expect = 7.4
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 99 GVAFGPASREVITVLCCYIASSF*SRIATEPSDCL 203
GVAF P+ T+LCC A DC+
Sbjct: 9 GVAFQPSEPIASTILCCECGVPTPPNAAAMCMDCI 43
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 309 DMYFSLISIIIDMNASLRRCNVRCRAIS 392
D++ LIS ++D N++ N +AIS
Sbjct: 141 DVFAWLISTLVDQNSTFETSNSSVKAIS 168
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 23.8 bits (49), Expect = 9.8
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 102 LPP-TCSPPPQRSRVRASLLPPT 37
LPP T +PPP SRV+ + PPT
Sbjct: 26 LPPRTMAPPPAPSRVQQA-PPPT 47
>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 167
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 102 LPPTCSPPPQRSRVRASLLPPTKKY 28
+PP+ SPPP R + + TKKY
Sbjct: 38 IPPSSSPPP-RLTITQRVKELTKKY 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,569,301
Number of Sequences: 5004
Number of extensions: 29181
Number of successful extensions: 93
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -