Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O21
(395 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-5|CAC35837.2| 406|Caenorhabditis elegans Hypothetical ... 31 0.30
Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical pr... 29 0.91
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 29 1.2
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 29 1.2
Z77132-4|CAB00862.3| 536|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF083225-1|AAD03683.1| 536|Caenorhabditis elegans nuclear recep... 29 1.6
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 27 3.7
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 27 3.7
U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical pr... 27 4.9
U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical p... 27 6.4
Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical p... 27 6.4
Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr... 27 6.4
AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical... 27 6.4
AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical... 27 6.4
AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin ... 27 6.4
AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin ... 27 6.4
AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear recep... 27 6.4
Z81131-2|CAB03425.1| 349|Caenorhabditis elegans Hypothetical pr... 26 8.5
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 26 8.5
L23646-7|AAA28038.3| 471|Caenorhabditis elegans Hypothetical pr... 26 8.5
AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical ... 26 8.5
AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical ... 26 8.5
>AL132904-5|CAC35837.2| 406|Caenorhabditis elegans Hypothetical
protein Y111B2A.9a protein.
Length = 406
Score = 31.1 bits (67), Expect = 0.30
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 246 CVGDALTQVSSADNTNSHWAQSQFEIKNS-RRCNNTVPLSPLVRPDRTRLPPTCSPPPQ 73
C +L Q+ S T+ H ++ + R+ + +P L+ D PP CSPPP+
Sbjct: 56 CAQQSLRQLPSPSQTSPHGSRFMDGYRRRMRQASLNLPSETLLDED-LGFPPVCSPPPE 113
>Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical
protein ZK1098.1 protein.
Length = 724
Score = 29.5 bits (63), Expect = 0.91
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -3
Query: 240 GDALTQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPD--RTRLPPTCSPPPQRS 67
G + + S+ + S W+ E N + ++PD +T L + S PQ+
Sbjct: 68 GMGIDESHSSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERSTSGQPQQG 127
Query: 66 RVRASLLPPTKKYYYNT 16
+ + + K YYYNT
Sbjct: 128 QWKEFMSDDGKPYYYNT 144
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 99 PPTCSPPPQRSRVRASLLPPTKKYYYNTTFTSC 1
P C P+ V + PPT ++YY+ T C
Sbjct: 688 PGACQGLPESEGVTGAPAPPTSRWYYDQTDMQC 720
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 99 PPTCSPPPQRSRVRASLLPPTKKYYYNTTFTSC 1
P C P+ V + PPT ++YY+ T C
Sbjct: 1106 PGACQGLPESEGVTGAPAPPTSRWYYDQTDMQC 1138
>Z77132-4|CAB00862.3| 536|Caenorhabditis elegans Hypothetical
protein F54D1.4 protein.
Length = 536
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/77 (23%), Positives = 31/77 (40%)
Frame = -3
Query: 243 VGDALTQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPTCSPPPQRSR 64
V D L ++ ++ S + ++TVPL P + + PPPQ+
Sbjct: 382 VSDLLLTTANCRKLSTQMGSSLSSVPPVPPPSDTVPLFHFSPPSLSPCQISAPPPPQQQY 441
Query: 63 VRASLLPPTKKYYYNTT 13
S +P T Y N++
Sbjct: 442 TDYSQMPSTSSYPANSS 458
>AF083225-1|AAD03683.1| 536|Caenorhabditis elegans nuclear receptor
NHR-7 protein.
Length = 536
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/77 (23%), Positives = 31/77 (40%)
Frame = -3
Query: 243 VGDALTQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPTCSPPPQRSR 64
V D L ++ ++ S + ++TVPL P + + PPPQ+
Sbjct: 382 VSDLLLTTANCRKLSTQMGSSLSSVPPVPPPSDTVPLFHFSPPSLSPCQISAPPPPQQQY 441
Query: 63 VRASLLPPTKKYYYNTT 13
S +P T Y N++
Sbjct: 442 TDYSQMPSTSSYPANSS 458
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 78 PQRSRVRASLLPPTKKYYYNTTFTS 4
PQ+S LLPP K+ + N FT+
Sbjct: 503 PQKSATSGQLLPPLKEKFLNWKFTA 527
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 78 PQRSRVRASLLPPTKKYYYNTTFTS 4
PQ+S LLPP K+ + N FT+
Sbjct: 503 PQKSATSGQLLPPLKEKFLNWKFTA 527
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 78 PQRSRVRASLLPPTKKYYYNTTFTS 4
PQ+S LLPP K+ + N FT+
Sbjct: 503 PQKSATSGQLLPPLKEKFLNWKFTA 527
>U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical
protein K09E3.7 protein.
Length = 859
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -3
Query: 204 TNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPTCSPPPQRSRVRASLLPPTKKY 28
+N QS+F + N + T+PLS +P + +PP +P P S + S +P Y
Sbjct: 760 SNMEAKQSRFPVWNQ---HPTMPLSFTPQPVPSMIPPVITPNP--SMISRSTMPLIMSY 813
>U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical protein
K06A1.6 protein.
Length = 937
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 208 QHKQSLGSVAIRDQKLEAM*QHSTVITSREAGPNATPSHLLPSSTEESRPR 56
+H QS+ V D+ L + IT REA P +PS++ + PR
Sbjct: 863 EHVQSVSDVCNTDECLLILDHAFPSITDREAVELFQPQQPIPSTSTSAAPR 913
>Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 228 TQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPTCSPPPQRSRVRASL 49
T+ SSA NS W + + + NN P + T+ P+ +PPP
Sbjct: 1028 TRASSASLANSSWYEHVPPLAPPQSNNNKSPPQACLFNPFTQSAPSPAPPPS-----TIP 1082
Query: 48 LPPTK 34
LPPT+
Sbjct: 1083 LPPTR 1087
>Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 228 TQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPTCSPPPQRSRVRASL 49
T+ SSA NS W + + + NN P + T+ P+ +PPP
Sbjct: 1022 TRASSASLANSSWYEHVPPLAPPQSNNNKSPPQACLFNPFTQSAPSPAPPPS-----TIP 1076
Query: 48 LPPTK 34
LPPT+
Sbjct: 1077 LPPTR 1081
>Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical
protein F32B6.1 protein.
Length = 492
Score = 26.6 bits (56), Expect = 6.4
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 177 FEIKNSRRCNNTVP-LSPLVRPDRTRLPPTCSPPPQRSRVRASLLPPTKKYYYN 19
F+ +N ++ N T P L PL + +R PP+ P P + +++L +K +YN
Sbjct: 182 FDFENMQQ-NPTPPGLLPL-KIERISTPPSDLPVPMDFSIHSAVLDIEQKVFYN 233
>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
protein F33H1.4 protein.
Length = 1385
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 202 KQSLGSVAIRDQKLEAM*QHSTVITSREAGPNATPSHLLPSSTEESRPRLITPSYEK 32
K + SV RD+ + +H++V + AGP P+HL + RP P + +
Sbjct: 225 KDVVKSVIERDRDEDQEQEHASV--ADPAGPPPAPAHLANKANSRGRPANPIPPHRR 279
>AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 228 TQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPTCSPPPQRSRVRASL 49
T+ SSA NS W + + + NN P + T+ P+ +PPP
Sbjct: 1028 TRASSASLANSSWYEHVPPLAPPQSNNNKSPPQACLFNPFTQSAPSPAPPPS-----TIP 1082
Query: 48 LPPTK 34
LPPT+
Sbjct: 1083 LPPTR 1087
>AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 228 TQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPTCSPPPQRSRVRASL 49
T+ SSA NS W + + + NN P + T+ P+ +PPP
Sbjct: 1022 TRASSASLANSSWYEHVPPLAPPQSNNNKSPPQACLFNPFTQSAPSPAPPPS-----TIP 1076
Query: 48 LPPTK 34
LPPT+
Sbjct: 1077 LPPTR 1081
>AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin
UNC-26B protein.
Length = 1113
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 228 TQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPTCSPPPQRSRVRASL 49
T+ SSA NS W + + + NN P + T+ P+ +PPP
Sbjct: 1022 TRASSASLANSSWYEHVPPLAPPQSNNNKSPPQACLFNPFTQSAPSPAPPPS-----TIP 1076
Query: 48 LPPTK 34
LPPT+
Sbjct: 1077 LPPTR 1081
>AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin
UNC-26A protein.
Length = 1119
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 228 TQVSSADNTNSHWAQSQFEIKNSRRCNNTVPLSPLVRPDRTRLPPTCSPPPQRSRVRASL 49
T+ SSA NS W + + + NN P + T+ P+ +PPP
Sbjct: 1028 TRASSASLANSSWYEHVPPLAPPQSNNNKSPPQACLFNPFTQSAPSPAPPPS-----TIP 1082
Query: 48 LPPTK 34
LPPT+
Sbjct: 1083 LPPTR 1087
>AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear receptor
NHR-4 protein.
Length = 492
Score = 26.6 bits (56), Expect = 6.4
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 177 FEIKNSRRCNNTVP-LSPLVRPDRTRLPPTCSPPPQRSRVRASLLPPTKKYYYN 19
F+ +N ++ N T P L PL + +R PP+ P P + +++L +K +YN
Sbjct: 182 FDFENMQQ-NPTPPGLLPL-KIERISTPPSDLPVPMDFSIHSAVLDIEQKVFYN 233
>Z81131-2|CAB03425.1| 349|Caenorhabditis elegans Hypothetical
protein T24D1.3 protein.
Length = 349
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 147 NTVPLSPLVRPDRTRLPPTCSPPPQRSRVRASLLPP 40
N +P +P +P+ +PPT P S+ RAS P
Sbjct: 118 NQIPAAPNTQPE---VPPTVQQPESSSQERASPTSP 150
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 138 PLSPLVRPDRTRLPPTCSPPP 76
P +PL+ P R LPP +P P
Sbjct: 301 PQAPLIFPGRPDLPPITAPSP 321
>L23646-7|AAA28038.3| 471|Caenorhabditis elegans Hypothetical
protein F44E2.7a protein.
Length = 471
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 192 WAQSQFEIKNSRRCNNTVPLSPLVRPDRTR 103
W++S+ C+ +VP SP+ R R R
Sbjct: 71 WSESKRSYDRDTSCSLSVPASPMSRESRNR 100
>AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical
protein Y39G8C.4 protein.
Length = 412
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 117 PDRTRLPPTCSPPPQRSRVRASLLPPTKKYYYNTTFTS 4
P+R R PP PP + + P T+ YYY T TS
Sbjct: 283 PER-RQPPKKPYPPAPTMPPDAYQPTTEAYYYPPTETS 319
>AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical
protein T26C12.3 protein.
Length = 393
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 162 SRRCNNTVPLSPLVRPDRTRLPPTCSPPPQRS 67
S+R +T+P S + RT P CS PP RS
Sbjct: 159 SQRVPSTLPGSNGIVMYRTPRCPVCSAPPSRS 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,030,046
Number of Sequences: 27780
Number of extensions: 180464
Number of successful extensions: 704
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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