Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O21
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   9.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   9.0  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 363 RCNVRCRAISG 395
           RC+VRC A SG
Sbjct: 18  RCSVRCSAASG 28


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 112 PNATPSHLLPSST 74
           P  TP  LLPS T
Sbjct: 255 PKMTPQSLLPSQT 267


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 219 SSADNTNSHWAQSQFEIKNSRRCNN 145
           S   N N H  Q+    K++ R NN
Sbjct: 438 SDNQNNNQHNDQAHHSSKSNNRHNN 462


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 178 LRLSPVTVCVVR 213
           LRL P T C+ R
Sbjct: 389 LRLIPTTTCIAR 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,639
Number of Sequences: 438
Number of extensions: 2277
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)