Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O20
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 130 1e-31
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 52 4e-08
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 29 0.45
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 27 1.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.4
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.6
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 5.6
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 5.6
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 25 5.6
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 25 7.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 9.7
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 25 9.7
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 9.7
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.7
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.7
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 130 bits (315), Expect = 1e-31
Identities = 72/178 (40%), Positives = 108/178 (60%), Gaps = 4/178 (2%)
Frame = +1
Query: 28 IMAETSSEKVSKNELKRRLKAEQ----KLKEKSEKAAQQPVQPTTXXXXXXXXXXXXPNE 195
++ + E+VSK ELK+R K K K+++EKAA PV P++
Sbjct: 17 VLDPVTGEQVSKTELKKREKQRARELAKAKKQAEKAASAPV--AAPKSSSKKEEDLDPSQ 74
Query: 196 YYKLRSTAVAALKKGSKEEHPYPHKFNVTISLEEFISKYNSLNSGEVLENITVSVAGRVH 375
Y++ RS + L++ +K+ +PYPHKF VTI+L EFI+KY L GE + V+VAGRV
Sbjct: 75 YFENRSRTIMELRQ-TKDPNPYPHKFQVTITLPEFIAKYEGLARGETKPEVEVAVAGRVL 133
Query: 376 SIRESGAKLIFYDLRAEGVKIQVMANAKLYESEEKFETDTDKLRRGDIIGCIGHPGKT 549
+R +G KL FY++ A+G K+QVM A+ ++ + F + LRRGDIIG G+PG++
Sbjct: 134 GLRTAGNKLRFYEIHADGKKLQVMCQAQDADTVD-FAAQHEHLRRGDIIGIRGYPGRS 190
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 52.4 bits (120), Expect = 4e-08
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Frame = +1
Query: 280 TISLEEFISKYNSLNSGEVLENITVSVAGRVHSIRESGAKLIFYDLRAEGVKIQVMANAK 459
T ++ I K+ + + + + +V GR+ SIR SG+KL F+D+ K+QV+ N K
Sbjct: 60 TTTIPVIIEKWRNKITKSEIAMVRYTVCGRISSIRYSGSKLAFFDVLYGNKKLQVVFNKK 119
Query: 460 LYESEE----KFETDTDKLRRGDIIGCIGHPGKT 549
+EE KF L++GD I C G+ G++
Sbjct: 120 NIGTEEEMKGKFIPRLKALQKGDCIQCSGNVGRS 153
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.1 bits (62), Expect = 0.45
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 232 KKGSKEEHPYPHKFNVTISLEEFISKYNSLNS---GEVLENITVSVAGRVHSIRESGAKL 402
K GS + YP + +TI++ E + L EV + TV+ H + K
Sbjct: 348 KTGSLKRRVYPEQ--ITINIGEGVPVPEPLPGHQWAEVKHDNTVTWLATWHENINNNVKY 405
Query: 403 IFYDLRAEGVKIQVMANAKLYESEEKFETDTDKLRRG 513
+F A G ++ ++ K YE K + D +R+G
Sbjct: 406 VFL---AAGSSLKGQSDLKKYEKSRKLKDYIDDIRKG 439
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 399 FSSRLSNRMYSTCNRYCYVF*NFSTIQTVIFTN 301
+S R S R+ S C YCYV+ NF+ + F +
Sbjct: 338 WSWRHSGRIVSACQEYCYVW-NFNKANPLEFVH 369
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 403 IFYDLRAEGVKIQVMANAKLYESEEKFETDTDKL 504
++++LR + V +Q N L ESE K +TD + L
Sbjct: 795 LYHELRDDHVNMQSQNNT-LLESESKLKTDCENL 827
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 298 FISKYNSLNSGEVLENITVSVAGRVHSIRES 390
F ++Y N EV ENI+ + R+H+ ES
Sbjct: 686 FFNQYVPQNPNEVRENISSVMKSRIHAKFES 716
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 170 KRRKSAPMNTINCDPPLWQHSK 235
KRR+ T N PPLW H K
Sbjct: 230 KRREEEKFLTSNDLPPLWYHCK 251
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 212 PPLWQHSKKDLKKNILTLIN 271
PP+ HS D+K+ IL L+N
Sbjct: 284 PPVESHSSFDIKQKILHLLN 303
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 5.6
Identities = 25/87 (28%), Positives = 36/87 (41%)
Frame = +1
Query: 256 PYPHKFNVTISLEEFISKYNSLNSGEVLENITVSVAGRVHSIRESGAKLIFYDLRAEGVK 435
P H F + LEEF K SL + + +S+ V SI+ I + V+
Sbjct: 188 PRAHSFLYSSILEEFPYKDESLLAQMTYISNVLSICEYVPSIKGPVLHAIIDKIIQIDVE 247
Query: 436 IQVMANAKLYESEEKFETDTDKLRRGD 516
IQV + E E++ TD D D
Sbjct: 248 IQVEVDDD-DEEEDEVVTDDDGTSNAD 273
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 149 PKKNLQSKRRKSAPMNTINCDPPLWQHSKKDL 244
P+ +S + P+ + + DP L+QH+++ L
Sbjct: 7 PRSESESDIEEETPLASKSFDPTLFQHARRKL 38
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 24.6 bits (51), Expect = 9.7
Identities = 22/99 (22%), Positives = 38/99 (38%)
Frame = +1
Query: 67 ELKRRLKAEQKLKEKSEKAAQQPVQPTTXXXXXXXXXXXXPNEYYKLRSTAVAALKKGSK 246
+L + KAEQ+ +E +EKAA + + ++ + A+ A +
Sbjct: 779 KLAAQQKAEQEAREAAEKAASEAAERSSSEAAASSSSESVAAASVEAERLAMEADEFNGA 838
Query: 247 EEHPYPHKFNVTISLEEFISKYNSLNSGEVLENITVSVA 363
E S E + N+ S EV+ + SVA
Sbjct: 839 SETVDGASVEAERSAMEAAALNNAAESTEVVGSSPESVA 877
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 199 YKLRSTAV--AALKKGSKEEHPYPHKFNV 279
YK + T V +A +GS+E P P +FN+
Sbjct: 32 YKYQKTLVYPSAFPQGSRENVPTPKEFNM 60
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 155 FSVVGWTGCCAAFSDFSFNFCSAF 84
FS + TG A + +SF CSAF
Sbjct: 492 FSSIHSTGSRALYMPYSFETCSAF 515
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 37 ETSSEKVSKNELKRRLKAEQKLKEKS 114
ET +E+V+ + +RLK E+ ++EKS
Sbjct: 377 ETFTEEVTSFQSTKRLKEEKIIQEKS 402
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 10 VNYYL*IMAETSSEKVSKNELKRRLKAEQKLKEKSEKA 123
+NY + + + + + KN++K L+++Q L E+ A
Sbjct: 1011 LNYRINTLRPKALDLIKKNDIKTLLQSDQLLVERKRNA 1048
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.131 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,707
Number of Sequences: 5004
Number of extensions: 35165
Number of successful extensions: 101
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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