Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O20
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 116 1e-26
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 55 3e-08
06_01_0241 - 1827161-1827624,1829688-1829828,1830566-1830593,183... 31 0.80
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 29 1.8
02_02_0603 - 12057820-12058094,12058164-12058305,12058469-120585... 29 3.2
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379... 28 4.3
04_04_0820 - 28342925-28343092,28343194-28343232,28343664-283437... 28 4.3
12_02_0501 + 19742007-19742143,19742253-19742398,19742559-197425... 28 5.6
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047... 28 5.6
04_03_1046 + 21974577-21975126,21975620-21975894,21976120-219762... 27 7.5
10_01_0251 + 2641320-2643272 27 9.9
01_06_0296 + 28282779-28283254,28283462-28283558,28286377-282864... 27 9.9
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 116 bits (279), Expect = 1e-26
Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 1/173 (0%)
Frame = +1
Query: 34 AETSSEKVSKNELKRRLKAEQKLKEKSEKAAQQPVQPTTXXXXXXXXXXXXPNEYYKLRS 213
A+ EK K E +RRLK E+K K+ + AA P P +YY+ R
Sbjct: 31 AKKREEKRKKQEEERRLKEEEKKKKAAATAAASGEPPKESAADDEEMD---PTQYYENRL 87
Query: 214 TAVAALKKGSKEEHPYPHKFNVTISLEEFISKYNSLNSGEVLENITVSVAGRVHSIRESG 393
A+ +LK + +PYPHKF I++ ++I KY S+N G+ L ++T +AGR+ + R
Sbjct: 88 KALDSLK--ATGVNPYPHKFLANITVADYIEKYKSMNVGDKLVDVTECLAGRIMTKRAQS 145
Query: 394 AKLIFYDLRAEGVKIQVMANAKLYESEE-KFETDTDKLRRGDIIGCIGHPGKT 549
+KL+FYDL G K+QV A+A+ E E+ +F L+RGDI+G G+PGK+
Sbjct: 146 SKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLKRGDIVGVCGYPGKS 198
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 55.2 bits (127), Expect = 3e-08
Identities = 37/102 (36%), Positives = 55/102 (53%)
Frame = +1
Query: 244 KEEHPYPHKFNVTISLEEFISKYNSLNSGEVLENITVSVAGRVHSIRESGAKLIFYDLRA 423
K PY +K++ T + +E Y L +GEV ++ VS+AGR+ + R G KL+F +R
Sbjct: 118 KGYEPYAYKWDRTHTTKELQDGYTHLENGEVCADVAVSIAGRIVARRAFG-KLVFMTVRD 176
Query: 424 EGVKIQVMANAKLYESEEKFETDTDKLRRGDIIGCIGHPGKT 549
+ IQ+ K +EE+FE + GDIIG G KT
Sbjct: 177 DSGTIQLYCE-KDSLTEEQFEQLKTIIDIGDIIGANGSIKKT 217
>06_01_0241 -
1827161-1827624,1829688-1829828,1830566-1830593,
1830639-1830728
Length = 240
Score = 30.7 bits (66), Expect = 0.80
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = +1
Query: 271 FNVTISLEEFISKYNSLNSGEV 336
F VT+S+++++S+YN + SGE+
Sbjct: 68 FEVTLSIDDYVSQYNKMISGEL 89
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 55 VSKNELKRRLKAEQKLKEKSEK 120
+ + EL+R+LK +QK KEK EK
Sbjct: 100 LDEKELERKLKKDQKAKEKEEK 121
>02_02_0603 -
12057820-12058094,12058164-12058305,12058469-12058515,
12058678-12058850,12059408-12059485,12059998-12060060,
12060135-12060207,12061989-12062377,12063225-12063304
Length = 439
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 199 YKLRSTAVAALKKGSKEEHPYPHKFNVTISLEEFISKYNSLNSGEVLEN 345
Y + + + LK +K E PY N+T + F + +L+ GE +EN
Sbjct: 59 YASQGSTTSGLKNVTKPELPYNAPKNLTTTRSIFTCRAPALDVGEKIEN 107
>10_08_0568 +
18837195-18837203,18837694-18837741,18837853-18837912,
18837986-18838155,18838297-18838369,18838529-18838594,
18838685-18838768,18838950-18839027,18839122-18839205,
18839562-18839641,18839791-18839848,18839933-18840235,
18840361-18840531,18840972-18841204,18841303-18841705,
18841961-18842212,18842293-18842790,18843073-18843170,
18843314-18843413,18843653-18843798,18843912-18844068
Length = 1056
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 55 VSKNELKRRLKAEQKLKEKSEK 120
+ + EL+R+LK +QK +EK EK
Sbjct: 5 LDEKELERKLKKDQKAREKEEK 26
>04_04_0820 -
28342925-28343092,28343194-28343232,28343664-28343729,
28343847-28343918,28344008-28344127,28344207-28344752
Length = 336
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +3
Query: 108 KIRKSCATTGPTYNRKKIFKARGGNQ 185
++ +SC+++G N+KK+ + RGG +
Sbjct: 181 RLARSCSSSGSDRNKKKLSEVRGGGK 206
>12_02_0501 +
19742007-19742143,19742253-19742398,19742559-19742596,
19742715-19742765,19743010-19743125,19743348-19743447,
19743537-19743572,19743724-19743774,19743906-19744029,
19744319-19744444,19744572-19744729
Length = 360
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 377 ECTLPATDTVMFSKTSPLFKLLYLLMNSSKEIVTLNL 267
EC L D+++ +P LL++L+N + I LNL
Sbjct: 256 ECFLNVDDSLIDCGGAPFLPLLFILVNMAFNIALLNL 292
>03_05_0952 +
29103879-29103983,29104103-29104600,29104693-29104794,
29105552-29105898,29105967-29106153,29106242-29106417,
29106976-29107065,29107066-29107322,29107593-29107687,
29107801-29107920,29108111-29108230,29108410-29108508,
29108588-29108689,29108884-29109111
Length = 841
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 102 KGKIRKSCATTGPTYNRKKIFKA 170
KG+ RK AT+ P YN KK KA
Sbjct: 219 KGRGRKRKATSAPKYNNKKAKKA 241
>04_03_1046 +
21974577-21975126,21975620-21975894,21976120-21976284,
21976352-21976441,21977723-21978097
Length = 484
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 46 SEKVSKNELKRRLKAEQKLKEKSEKAAQQ 132
SEK SK + K+ QKLKEK EK ++
Sbjct: 428 SEKASKEQEKQTEAEIQKLKEKMEKDREE 456
>10_01_0251 + 2641320-2643272
Length = 650
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +1
Query: 313 NSLNSGEVLENITVSVAGRVHSIRESGAKLIFYDLRAEGVKIQVMANAKLYESEEKFETD 492
NSL+S ++ NI + A + + + ++ D++ + + NAK+ +
Sbjct: 125 NSLDSLDIRLNIAIDCADALGYMHSMCSPVLHGDVKPSNILLDDSFNAKISDFGISRLLS 184
Query: 493 TDKLRRGDIIGCIGHP 540
TDK ++I C P
Sbjct: 185 TDKTHTENMITCYMDP 200
>01_06_0296 +
28282779-28283254,28283462-28283558,28286377-28286462,
28286953-28287034,28287506-28287633,28289727-28289784,
28290049-28290150,28290822-28290856,28291037-28291094
Length = 373
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 391 GAKLIFYDLRAEGVKIQVMANAKLYESEEKFETDTDKLRRGDIIGCIG 534
GAK++ D VK+ A + E+ F D LR G I +G
Sbjct: 10 GAKVVLPDGAVRAVKVPAKAAELMLEAPGHFLADARALRAGGRIAALG 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,571,090
Number of Sequences: 37544
Number of extensions: 204663
Number of successful extensions: 512
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -