Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O19
(196 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 29 0.085
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 29 0.085
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 26 0.60
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 1.0
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 24 2.4
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 24 2.4
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 24 3.2
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 23 4.2
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 23 5.6
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 23 5.6
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 23 7.4
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 23 7.4
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 23 7.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 23 7.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 22 9.7
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 22 9.7
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 22 9.7
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 22 9.7
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 22 9.7
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 29.1 bits (62), Expect = 0.085
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 6 SKYEREEFEKLRDAGRFANDGCNVKYRPEHGPL 104
S+Y R+E+ + R G DGC K+ + G L
Sbjct: 174 SQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 29.1 bits (62), Expect = 0.085
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 6 SKYEREEFEKLRDAGRFANDGCNVKYRPEHGPL 104
S+Y R+E+ + R G DGC K+ + G L
Sbjct: 174 SQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 26.2 bits (55), Expect = 0.60
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 153 KYFTHYVVHFGISSRHRGVHALGGT*RCIHR*QN 52
KY H+ VH H + ++ G RCI + N
Sbjct: 589 KYIHHFWVHTWFDKTHPDIESITGIIRCIDKVPN 622
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 19 VRNLRSYVMLDVLLTMDATSSTAQSMDPS 105
V +LRS+++ + L+++ ++SST + PS
Sbjct: 176 VASLRSHILFNALISILSSSSTLHKLYPS 204
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 74 RQVPPRAWTPRCLE 115
R VP +AW RC+E
Sbjct: 171 RNVPEKAWANRCVE 184
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 15 EREEFEKLRDAGRFANDGCNVKY 83
+R+ ++L D +F D CNV+Y
Sbjct: 148 QRDHLDRLCDQVKFYLDQCNVEY 170
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 23.8 bits (49), Expect = 3.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 1 ARASTNVRNLRSYVMLDVLLTMDATSSTAQSMDPSMSGGNS 123
A AST++ + V + + ATSS S D S+S G S
Sbjct: 143 ASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTS 183
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 87 PEHGPLDVWRKFQNELH 137
PE P+D WRK+ H
Sbjct: 606 PEDKPVDTWRKYHLLAH 622
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 10 STNVRNLRSYVMLDVLLTMDATS 78
STN RN R LDV+LT A++
Sbjct: 580 STNERNQRYSNCLDVVLTHSASN 602
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 57 ANDGCNVKYRPEHGPLDVWRKFQN 128
++DG V+Y H VWR++ +
Sbjct: 35 SSDGSYVEYEIVHQKRSVWRRYSD 58
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 22.6 bits (46), Expect = 7.4
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -1
Query: 169 VYYYFKIFYTLCSSFWN 119
+YY+ ++L S+WN
Sbjct: 1125 MYYFLPTVFSLSGSYWN 1141
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 175 LGVYYYFKIFYTLCSSF 125
LG + FK+FY L SF
Sbjct: 91 LGFFNLFKVFYPLIISF 107
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 118 FLQTSRGPCSGRYLTLHPSLAKRP 47
F + RGPC RYL+ RP
Sbjct: 10 FTFSKRGPCVFRYLSTLEGTTVRP 33
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 141 HYVVHFGISSRHRGVH 94
+Y+ HF I+S HR V+
Sbjct: 555 NYLDHFDIASAHRNVY 570
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 195 FFFFFLLWECIIISKYFT 142
F FFF L C+ +S F+
Sbjct: 155 FLFFFFLCVCVFLSFLFS 172
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 90 EHGPLDVWRKFQNELHSV*NI 152
++ P+D W ELHS+ +I
Sbjct: 391 QYMPIDQWNAALTELHSILDI 411
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 13 TNVRNLRSYVMLDVLL 60
T +RN+ S V+LDVLL
Sbjct: 467 TGLRNIISDVLLDVLL 482
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 79 STAQSMDPSMSGGNS 123
ST M+P + GGNS
Sbjct: 456 STVPKMNPKLQGGNS 470
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 22.2 bits (45), Expect = 9.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 15 EREEFEKLRDAGRFANDGCNVKYRPEHGPLDV 110
+ +E EKL DA F D + + PLD+
Sbjct: 49 QEDELEKLEDAELFMFDTGSADGAKDSVPLDI 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 806,285
Number of Sequences: 5004
Number of extensions: 12961
Number of successful extensions: 46
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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