Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O19
(196 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 33 0.032
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 32 0.056
09_04_0327 + 16700235-16700312,16701756-16701978,16702488-167027... 29 0.52
09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745... 28 1.2
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 27 2.1
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 27 2.8
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139... 25 6.4
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 25 6.4
02_01_0179 - 1227573-1227803,1227916-1228138,1228159-1228185,122... 25 6.4
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 33.1 bits (72), Expect = 0.032
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 6 SKYEREEFEKLRDAGRFANDGCNVKYRPEHGPL 104
+K+ REE+ KL+ GR +DG N + HG L
Sbjct: 174 TKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 32.3 bits (70), Expect = 0.056
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 6 SKYEREEFEKLRDAGRFANDGCNVKYRPEHG 98
++++R+E+ KL+ GR DG N K HG
Sbjct: 481 TRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>09_04_0327 +
16700235-16700312,16701756-16701978,16702488-16702730,
16702815-16702865,16702965-16703225,16703319-16703371,
16703446-16703815,16703906-16704750
Length = 707
Score = 29.1 bits (62), Expect = 0.52
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 141 HYVVHFGISSRHRGVHALGGT*RCI 67
+Y+VHF + ++ +G LGGT CI
Sbjct: 260 YYIVHFFLRNKRQGWQLLGGTVLCI 284
>09_02_0339 +
7452967-7453068,7453281-7453339,7453889-7454701,
7455123-7455498,7455978-7456019
Length = 463
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 186 FFLLWECIIISKYF-THYVVHFGISSRH 106
F LW I++++YF TH V FG S H
Sbjct: 30 FKFLWFHIVLAEYFYTHSCVLFGFSEAH 57
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 24 EFEKLRDAGRFANDGCNVKYRPEHGPLDVWRKFQNELH 137
E EK GC V + P H +D RK N++H
Sbjct: 611 ELEKCTKLVEGGCTGCPVSFAPLHKSIDQLRKAANKIH 648
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 156 SKYFTHYVVHFGISSRHRGVHALGGT 79
S Y+TH+ + GISSR + H +G T
Sbjct: 232 SPYYTHHQIPLGISSRQQ--HFVGST 255
>06_01_0179 -
1388602-1389572,1390060-1390129,1390346-1390439,
1390587-1390687,1391152-1391220,1391328-1391482,
1392193-1392241,1392611-1392739,1392825-1393580,
1394711-1394902
Length = 861
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 78 KYRPEHGPLDVWRKFQNE 131
++RPE+ P+ WRK +E
Sbjct: 312 RHRPENNPITYWRKLIDE 329
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 7 ASTNVRNLRSYVMLDVLLTMDATSSTAQSMDPS 105
A++++R LR Y +LD LL A + Q D S
Sbjct: 305 AASSLRLLRKYGLLDFLLPFQAAYMSDQMKDKS 337
>02_01_0179 -
1227573-1227803,1227916-1228138,1228159-1228185,
1228519-1228651,1228748-1228865,1229357-1229451,
1229886-1230048
Length = 329
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 150 YFTHYVVHFGISSRHRGV 97
Y Y++HF +++RH GV
Sbjct: 110 YLDLYLIHFPVATRHTGV 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,276,424
Number of Sequences: 37544
Number of extensions: 81229
Number of successful extensions: 255
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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