Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O19
(196 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 44 1e-05
AL031630-12|CAA20991.1| 375|Caenorhabditis elegans Hypothetical... 29 0.60
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 0.80
Z81094-3|CAB03151.1| 477|Caenorhabditis elegans Hypothetical pr... 27 1.4
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 27 2.4
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 27 2.4
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 27 2.4
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 26 4.3
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 26 4.3
AF000299-10|AAC47986.1| 338|Caenorhabditis elegans Seven tm rec... 25 7.4
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ... 25 9.8
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 44.0 bits (99), Expect = 1e-05
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +3
Query: 6 SKYEREEFEKLRDAGRFANDGCNVKYRPEHGPLDVW 113
+K++RE++E++R GR +DG V+ + EHGPL W
Sbjct: 174 TKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209
>AL031630-12|CAA20991.1| 375|Caenorhabditis elegans Hypothetical
protein Y38H6C.13 protein.
Length = 375
Score = 28.7 bits (61), Expect = 0.60
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 169 VYYYFKIFYTLCSSFWNFLQ 110
V+Y FKIF + CS+F+ F++
Sbjct: 20 VFYPFKIFLSACSNFFQFIR 39
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.3 bits (60), Expect = 0.80
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 73 TSSTAQSMDPSMSGGNSKMNYIVCKIF*NNNTLP 174
T S+ SM+P+ S NS N+ V N+N LP
Sbjct: 881 TPSSIPSMEPTRSTANSSKNHPVSSKISNSNRLP 914
>Z81094-3|CAB03151.1| 477|Caenorhabditis elegans Hypothetical
protein F58G11.4 protein.
Length = 477
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 178 ALGVYYYFKIFYTLCSSFWNFLQTSRGPCS-GRYLTLH 68
+L VY+ + IF T+ ++ L S GP S G +TLH
Sbjct: 19 SLVVYFQYAIFTTIMYTYMTKLDPSVGPTSFGLAVTLH 56
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 28 LRSYVMLDVLLTMDATSSTAQSMDPSMSGGNS-KMNYIVCKIF*NNNTL 171
LRS+ + LT ++ S T S PS+ GG S K + + NN+L
Sbjct: 278 LRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYWGTNNSL 326
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 28 LRSYVMLDVLLTMDATSSTAQSMDPSMSGGNS-KMNYIVCKIF*NNNTL 171
LRS+ + LT ++ S T S PS+ GG S K + + NN+L
Sbjct: 278 LRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYWGTNNSL 326
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 28 LRSYVMLDVLLTMDATSSTAQSMDPSMSGGNS-KMNYIVCKIF*NNNTL 171
LRS+ + LT ++ S T S PS+ GG S K + + NN+L
Sbjct: 306 LRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYWGTNNSL 354
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 160 YFKIFYTLCSSFWNFLQTS-RGPCSGRYLTL 71
YF +CS +N L S +GPC G +TL
Sbjct: 4072 YFLRAIQVCSQVFNTLTESIQGPCVGNQMTL 4102
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 160 YFKIFYTLCSSFWNFLQTS-RGPCSGRYLTL 71
YF +CS +N L S +GPC G +TL
Sbjct: 4064 YFLRAIQVCSQVFNTLTESIQGPCVGNQMTL 4094
>AF000299-10|AAC47986.1| 338|Caenorhabditis elegans Seven tm
receptor protein 162 protein.
Length = 338
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 175 LGVYYYFKIFYTLCSSFWNFLQTSRGP 95
LG Y Y +++ S F++FL+ P
Sbjct: 36 LGTYKYLMVYFASVSLFYSFLECLLNP 62
>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
protein Y45G5AM.2 protein.
Length = 1061
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 21 EEFEKLRDAGRFANDGCNVKYRPEHG 98
EEF+ R R A CN+K R HG
Sbjct: 289 EEFKHERTEFRRARHVCNLKSRRNHG 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,471,389
Number of Sequences: 27780
Number of extensions: 73287
Number of successful extensions: 260
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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