Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O16
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 52 7e-08
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 48 1e-06
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 40 2e-04
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 31 0.077
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 29 0.31
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 27 1.7
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 26 2.9
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 26 3.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 5.1
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 25 6.7
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 8.9
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 51.6 bits (118), Expect = 7e-08
Identities = 24/54 (44%), Positives = 35/54 (64%)
Frame = +3
Query: 18 QVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERAVGTLDTYSYLA 179
+ L+H L++E + Q + F P V+ IK+CI+ LI+K+YLER D Y YLA
Sbjct: 716 RTLKHVVLVKETIDQIKSRFTPKVSDIKQCIDMLIEKEYLERQ--GRDEYIYLA 767
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +3
Query: 18 QVLRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERAVGTLDTYSYLA 179
+V H +L+ EV Q F PS MIK+ IEALI+++YL+R Y YLA
Sbjct: 732 KVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 24 LRHAELIQEVVSQARGSFAPSVAMIKKCIEALIDKQYLERAVGTLDTY 167
++H +L+Q V++ + P V+ +K IE L++K+YLER + TY
Sbjct: 685 MKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLEREDNDIYTY 732
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 31.5 bits (68), Expect = 0.077
Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -2
Query: 257 QLLVRMRAQLLVRM-RMQLSVRMRV*LRKVGVGVECADGSLEVLLVDERFDTFLD 96
++L +R+Q+L+ + + SV++ + +K+GV + + +L L++DER + +D
Sbjct: 351 KILYSIRSQVLIELVKPYTSVKLSLLAKKLGVSISIIEQALVGLIIDERVNGKID 405
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 29.5 bits (63), Expect = 0.31
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 188 HASGPTAAYASGPTIAHASGPTTAHVSGPT--AAYASGPTTAHASGPTTAHASGPTA 352
H++ P+ Y++ + S P+T HVS T ++ PT+ + P + P +
Sbjct: 329 HSTPPSQMYSAASHFRYRSDPSTRHVSNSTNKSSLHPSPTSLRVAHPIIPQRASPAS 385
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 119 HRQAVPRASRRHTRHLLLPCVTIHASGPTAAYASGPTI-AHASGPTTAHVSGPTAAYASG 295
H QA A++ ++R P V + SGP A P A A G SG A A G
Sbjct: 133 HEQAAGHAAQAYSRVTKKPGVVLVTSGPGATNVITPIADALADGTPLVVFSGQVATSAIG 192
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 229 NCARIRTNNCARIRTDSCI-RIRTNNCARIRTNNCARIRTDSCTRIRTKNCARIRTNNCA 405
+C +C + SC + + C+ +T+ C++ + CT + C+ ++ CA
Sbjct: 238 SCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTSEKPSCCSNGKSTVCA 297
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 311 RAQLLVRMRMQLSVRIRAQLLVRMRAQLLVRMRMQLS 201
R QLL+ Q + R+++QLL Q V++R L+
Sbjct: 51 RLQLLLSQLQQEAFRLKSQLLAHQGCQCSVKIRSVLT 87
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 191 ASGPTAAYASGPTIAH--ASGPTTAHVSGPTAAYASGPTTAHASGPT 325
AS AA AS T++ ASG +T S ++ +S TTA +S T
Sbjct: 1108 ASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSAATTADSSVTT 1154
Score = 25.0 bits (52), Expect = 6.7
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Frame = +2
Query: 173 PCVTIHASGPTAAYASGPTIAHASGPT----TAHVSGPTAAYASGPTTAHASGPTTAHAS 340
P VT S ++ SG A +S T ++ ++ AA + +++ AS +++
Sbjct: 903 PAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEV 962
Query: 341 GP-TAAHASGPKTAHXXXXXXXXXXXXXXXXXXXXLSVLQYVAAALET 481
P TAA A+G T+ S +AAA T
Sbjct: 963 DPSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVT 1010
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 173 VGVGVECADGSLEVLLVDERFDTFLDHSDGGSERAARL 60
V GVE +GS E+ L E D D D E+ A L
Sbjct: 561 VASGVESDEGSEEISLDSEYSDILSDDGDFEKEKQATL 598
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Frame = +2
Query: 134 PRASRRHTRHLLLPCVTIHASGPTAAYASGPTIAHASGPTTAHVSGPTAAYASGPTTAHA 313
PR S ++ L C + + A A G + P S T Y +
Sbjct: 149 PRLSSLLADYIPL-CARVSGTRVLATMAQGAIAVQRAAPNLEIKSTTTPLYMERASYLFG 207
Query: 314 SG--PTTAHASGPTAAHASGPKTAH 382
+ P + P + + GPKTAH
Sbjct: 208 ASNPPAYTYTYIPESKYVPGPKTAH 232
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 188 HASGPTAAYASGPTIAHASGPTTAHVSGPTAAYASGPTTAHASGPTTAHASGPTAAHASG 367
H+S PT +S + P++A+ + PT A + TT S A + GP + G
Sbjct: 592 HSSRPTPNASSPLDVRSKQKPSSANSNAPTPA-PTVNTTNPESSTNEATSVGPALEPSQG 650
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,122
Number of Sequences: 5004
Number of extensions: 35146
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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