Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O15
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo...    27   1.2  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          26   2.7  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   3.6  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   3.6  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   4.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   4.8  
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass...    25   6.3  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   8.4  

>SPBC16E9.15 |||heat shock factor binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 75

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 351 IRGSTQNPHNTEYMKNVTLKFLTLAPGDERSRLVPVLQKILTLTTEETQ 497
           +RG+++NP +T  +  +T K L    GD  +      +K+ T++T   Q
Sbjct: 5   VRGNSKNPQSTSAITTLTDKLLEDISGDFETLQKQFSEKLETMSTRLDQ 53


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 253 CCCACNLRFKSAISCSG 203
           CC  CNL  K    CSG
Sbjct: 29  CCLECNLEHKRLTKCSG 45


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 207 EQEIADLKRRLQAQQQRVKHITVLLSESERECARMAQLSELLK---GELRRIRGSTQNPH 377
           EQ++ +L    Q  ++ +K ++  +   +    +  Q+SEL K    +  RI   + N  
Sbjct: 206 EQQLQELSVHNQQLEESIKQVSSSIELEKINAEQRLQISELEKLKAAQEERIEKLSSNNR 265

Query: 378 NTEYMK 395
           N E +K
Sbjct: 266 NVEILK 271


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 256 LCCCACNLRFKSAISCS 206
           L CC C LR+ + + CS
Sbjct: 305 LVCCICKLRWGTCVQCS 321


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 216 IADLKRRLQAQQQRVKHITVL 278
           IA+LKRR+Q +Q  ++ +T+L
Sbjct: 550 IANLKRRIQFRQIHLRRLTIL 570


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +3

Query: 288 SERECARMAQLSELLKGELRRIRGSTQNPHNTEYMKNVTLKFLTLAPGDERSRLVPVLQK 467
           SERE  R   L + L  +L     S + P ++   ++  LKF++ +  D    L P +  
Sbjct: 403 SERELLRRFTLQQRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDD----LFPYMDN 458

Query: 468 ILTLTTE 488
            + L  +
Sbjct: 459 FIQLAVQ 465


>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
           assembly of the V-ATPase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 52  VRALSQHPVLRHPNHTRQV 108
           VR LS  PV    NHTRQ+
Sbjct: 135 VRYLSAQPVRTSKNHTRQI 153


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 135 LDRLLEEGVPDDEALDTTSLAFTPEQEIADLKRRLQAQQQRVKHITVL 278
           L+ L  EG+  +  L+     F    E+  L+ +L+  QQ     T+L
Sbjct: 639 LNLLRVEGISPEFMLERCFFQFQNSLEVPKLEAKLEESQQHYDSFTIL 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,030
Number of Sequences: 5004
Number of extensions: 31888
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)