Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O12
(362 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 101 5e-23
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 33 0.018
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 0.68
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 0.68
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 27 0.90
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 1.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 2.7
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 4.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 4.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 24 8.3
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 101 bits (241), Expect = 5e-23
Identities = 43/92 (46%), Positives = 62/92 (67%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGARAAFSKVVEAIKTNFNER 181
LPALC+KMGVPY IVK K+RLG ++H+KT +A+T V + + +V A+ NF+ +
Sbjct: 166 LPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAK 225
Query: 180 YEELRRHWAGGVLGNKSNARIAKLEKAKAREI 85
Y+E RR W GG++G K+ A +AK KA A +
Sbjct: 226 YDESRRKWGGGIMGGKTQALLAKRAKAAAATV 257
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 32.7 bits (71), Expect = 0.018
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGARAAFSKVVEAIKTNFNER 181
+P LC VPY K LG + K TS + V G + SKV E + E
Sbjct: 88 IPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMI-VPGGKKKDMSKVEE-----YKES 141
Query: 180 YEEL 169
YEE+
Sbjct: 142 YEEI 145
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.5 bits (58), Expect = 0.68
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 81 VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 182
++ H PSP A +Y T Y G V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.5 bits (58), Expect = 0.68
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 81 VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 182
++ H PSP A +Y T Y G V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 27.1 bits (57), Expect = 0.90
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTSVALTNVES 241
LP LC VPY V K+ LG V R ++ TN S
Sbjct: 66 LPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEAS 107
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 196 QLQ*ALRRVTQTLGRWRPR*QVERAYRQAGE 104
Q++ L R+ Q +G + R ++ERA RQA E
Sbjct: 249 QIRFNLERICQDIGNFDVRSRIERAARQARE 279
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 2.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 152 PAQCLRNSS*RSLKLVLIASTTFEKAARAPDSTFVRATLVQVLRCTSAPNRDLPFT 319
P Q + +SS S V + S++ + + DST + +T + T P P T
Sbjct: 264 PTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPIT 319
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 177 EELRRHWAGGVLGNKSNARIAKLEKAKAREIAQK 76
+ L+ AGG G S+ +A L+ K R+ AQK
Sbjct: 4 DSLKDAIAGGAAGLASSLVVAPLDVVKTRKQAQK 37
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 362 SCQR-FAVRWESRTVS*RVNHDWVRLYTVRL 273
SC++ F+ WES H WVRL RL
Sbjct: 2232 SCEKEFSKIWESMRYLILFKHAWVRLSVSRL 2262
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -3
Query: 195 NFNERYEELRRHWAGGVLGNKSNARIAKLEKAKAREIA 82
NFN Y+E R+ V+ ++ +A + R++A
Sbjct: 871 NFNSAYQEYRQLHQSSVINAAASGALAHSSRLWGRDVA 908
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,220
Number of Sequences: 5004
Number of extensions: 22752
Number of successful extensions: 81
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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