Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O12
(362 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 123 5e-29
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 122 7e-29
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 81 2e-16
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 31 0.28
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 30 0.64
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 28 2.6
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 27 3.4
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 27 3.4
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 27 3.4
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 27 4.5
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 27 4.5
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 27 6.0
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 27 6.0
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 123 bits (296), Expect = 5e-29
Identities = 53/95 (55%), Positives = 75/95 (78%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGARAAFSKVVEAIKTNFNER 181
LPALCRKM VPYCIVKGK+RLG++VH+KT + + LT V++ + FSK++EAIK NFN++
Sbjct: 162 LPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDK 221
Query: 180 YEELRRHWAGGVLGNKSNARIAKLEKAKAREIAQK 76
++E+R+ W GGV+G+KS A+ EK A+E AQ+
Sbjct: 222 FDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQR 256
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 122 bits (295), Expect = 7e-29
Identities = 51/95 (53%), Positives = 76/95 (80%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGARAAFSKVVEAIKTNFNER 181
LPALCRKM +PYCIVKGK+RLG++VH+KT + + LT V++ + FSK++EAIK+NFN++
Sbjct: 147 LPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDK 206
Query: 180 YEELRRHWAGGVLGNKSNARIAKLEKAKAREIAQK 76
++E+R+ W GG++G+KS A+ EK A+E AQ+
Sbjct: 207 FDEVRKKWGGGIMGSKSQAKTKAREKLLAKEAAQR 241
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 81.4 bits (192), Expect = 2e-16
Identities = 41/95 (43%), Positives = 61/95 (64%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGARAAFSKVVEAIKTNFNER 181
LPALCRKM +VH+KT + + LT V++ + FSK++EAIK NFN++
Sbjct: 146 LPALCRKM--------------EIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDK 191
Query: 180 YEELRRHWAGGVLGNKSNARIAKLEKAKAREIAQK 76
++E+R+ W GGV+G+KS A+ EK A+E AQ+
Sbjct: 192 FDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQR 226
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 31.1 bits (67), Expect = 0.28
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRL--GALVHRKTCTSVALTNVESGARAAFSKVVEAIKTNFN 187
+P LC + +PY V K L R TC + LT G V E +KT+++
Sbjct: 79 VPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGELE--EDVKEKLKTDYD 136
Query: 186 ERYEEL 169
+ E+
Sbjct: 137 QVMSEV 142
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 29.9 bits (64), Expect = 0.64
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = +2
Query: 95 AFAFSSLAIRAFDLLPRTPPAQCLRNSS*RSLKLVLIASTTFEKAARAPDSTFVRATLVQ 274
A AF L + A LL PP+ + + R ++ + R P+ + A
Sbjct: 9 ALAFF-LLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSD 67
Query: 275 VLRCTSAPNRDLPFTIQYGT 334
+R T D P T++YGT
Sbjct: 68 KMRVTWITGGDAPATVEYGT 87
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRL--GALVHRKTCTSVALTNVESGARAAFSKVVEAIKTNFN 187
+P LC + +PY V K L R TC + +T G +V E +K++++
Sbjct: 79 VPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKG--EINEEVKEKLKSDYD 136
Query: 186 ERYEEL 169
E+
Sbjct: 137 HVVAEV 142
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 345 RKMGVPYCIVKGKSRLGALVHRKTCTSV 262
R + P I+K +R+ A +H +TC+SV
Sbjct: 87 RLVNSPINIIKANARVKAALHNQTCSSV 114
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 83 AISRAFAFSSLAIRAFDLLPRTPPAQCLRNSS*RSLKLVLIASTTFEKAARAPD 244
A + + A SS R L R+PP LR + R ++V A T E A AP+
Sbjct: 8 AAASSTAASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>02_04_0622 -
24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -3
Query: 231 AAFSKVVEAIKTNFNERYEELRRHWAGGVLGNKSNARIAKLE-KAKAREIAQKQ 73
AA S + E + ++ +EEL+RH + N+R+ K+E KA++ + A+ Q
Sbjct: 179 AAISCIEEMYRNMGSQFHEELQRHNLPSYMLKDINSRLDKIEPKARSSDGARMQ 232
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 93 APSPSPAWRYARSTCYRGRHRPSVCVTLRNA 185
APSPSP A + GRH V R+A
Sbjct: 153 APSPSPQMHAASRRHHHGRHHQQVAPKARSA 183
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Frame = -3
Query: 237 ARAAFSKVVEAIKTNFNE-------RYEELRRHWAGGVLGNKSNARIAKLEKAK 97
A+ A S E + +FN R +EL W G LGN ++K+EK K
Sbjct: 829 AKLASSAAEETLTGSFNPVQERRRAREKELMDAWGGVGLGNSMKPHLSKIEKDK 882
>07_03_0770 -
21375099-21375122,21375321-21375448,21375541-21375672,
21377016-21377874
Length = 380
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 139 TEDATGPVSA*LFVTLIEVGLDSFHYLREGGTGSRLHICKSD 264
TED SA L +T ++V D+FH ++ G G + K D
Sbjct: 334 TEDFESVKSALLSLTSLQVATDNFHKSKKIGEGGFGEVYKVD 375
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 80 CAISRAFAFSSLAIRAFDLLPRTPPAQCLRNSS*RSLKLVLIASTTFEKA-ARAPDSTF 253
C++ A F S D +P+ PP + +S + +VL+ S + + P S F
Sbjct: 425 CSVFNAITFVSTLASGSDQIPKEPPIEKTLRASIAEISVVLLFSDEMDAGNSSVPISQF 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,318,640
Number of Sequences: 37544
Number of extensions: 186282
Number of successful extensions: 579
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -