Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O12
(362 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 113 5e-26
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 113 5e-26
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 30 0.43
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 29 0.75
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 27 3.0
U23453-8|AAC46759.1| 301|Caenorhabditis elegans Hypothetical pr... 27 3.0
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 26 7.0
Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z81096-6|CAJ80827.1| 691|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z81096-5|CAD54150.1| 507|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z81096-4|CAB54264.2| 689|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z81096-3|CAB54265.2| 747|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical p... 26 9.3
Z78065-10|CAJ80826.1| 691|Caenorhabditis elegans Hypothetical p... 26 9.3
Z78065-8|CAD54156.1| 507|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z78065-7|CAB54297.2| 689|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z78065-6|CAB54298.2| 747|Caenorhabditis elegans Hypothetical pr... 26 9.3
AL110485-26|CAB60359.3| 779|Caenorhabditis elegans Hypothetical... 26 9.3
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 113 bits (271), Expect = 5e-26
Identities = 48/94 (51%), Positives = 71/94 (75%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGARAAFSKVVEAIKTNFNER 181
LPALCRK VPY I+KGK+ LG +V RKT +VAL +V ++A +K+VE + NF+ER
Sbjct: 171 LPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSER 230
Query: 180 YEELRRHWAGGVLGNKSNARIAKLEKAKAREIAQ 79
+EE+R+HW GGV+ KS+A+ K+E+A+AR++ +
Sbjct: 231 HEEIRKHWGGGVMSAKSDAKKLKIERARARDLGK 264
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 113 bits (271), Expect = 5e-26
Identities = 48/94 (51%), Positives = 71/94 (75%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGARAAFSKVVEAIKTNFNER 181
LPALCRK VPY I+KGK+ LG +V RKT +VAL +V ++A +K+VE + NF+ER
Sbjct: 151 LPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSER 210
Query: 180 YEELRRHWAGGVLGNKSNARIAKLEKAKAREIAQ 79
+EE+R+HW GGV+ KS+A+ K+E+A+AR++ +
Sbjct: 211 HEEIRKHWGGGVMSAKSDAKKLKIERARARDLGK 244
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 30.3 bits (65), Expect = 0.43
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 200 LIASTTFEKAARAPDSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPI 340
L+ T E A ++ D F V V TS+PN+D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 29.5 bits (63), Expect = 0.75
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -3
Query: 360 LPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTSVALTNVESGARAAFSKVVEAIK 199
LP LC VPY V+ K+ LG V R + N S ++ K+ E ++
Sbjct: 69 LPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 279 YGVQAHPIVIYPSRYSTGLPS 341
YGV+A P+V YP+ STGL S
Sbjct: 155 YGVKA-PVVSYPTSVSTGLSS 174
>U23453-8|AAC46759.1| 301|Caenorhabditis elegans Hypothetical
protein B0252.5 protein.
Length = 301
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 336 GVPY-CIVKGKSRLGALVHRKTCTSVALTNVESGARAAFSKVVEAIKTNFNERYEEL 169
GVP C++ K ++G + + VA + ++ G+R+ + + F ER +L
Sbjct: 64 GVPRKCVIIRKKKVGENMEKIELRYVAYSRIDKGSRSTTMEAINHAAAYFRERAGDL 120
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 324 CIVKGKSRLGALVHRKTCTSVALTNVESGARAAFSKVVEA 205
C++ K+ +G H+K S L + AA +V+EA
Sbjct: 1642 CVLNPKTEMGICCHQKHTQSSVLNLISPAIVAAAPEVIEA 1681
>Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGA--RAAFSKVVEAIKTNFNERYEELRRHWAGGVL 142
K + + L H+ S + + GA R + ++ TN+ R+ R G +
Sbjct: 454 KNQIAVAPLAHKSRHLSESRDEMRGGAERRGSGGQMNLPAYTNYLIRHSGEER-LVDGPV 512
Query: 141 GNKSNARIAKLEK-AKAREIAQKQ 73
N S+ARIA LEK + E+ QK+
Sbjct: 513 TNASDARIAYLEKRIRELELTQKE 536
>Z81096-6|CAJ80827.1| 691|Caenorhabditis elegans Hypothetical
protein T09E8.1f protein.
Length = 691
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGA--RAAFSKVVEAIKTNFNERYEELRRHWAGGVL 142
K + + L H+ S + + GA R + ++ TN+ R+ R G +
Sbjct: 223 KNQIAVAPLAHKSRHLSESRDEMRGGAERRGSGGQMNLPAYTNYLIRHSGEER-LVDGPV 281
Query: 141 GNKSNARIAKLEK-AKAREIAQKQ 73
N S+ARIA LEK + E+ QK+
Sbjct: 282 TNASDARIAYLEKRIRELELTQKE 305
>Z81096-5|CAD54150.1| 507|Caenorhabditis elegans Hypothetical
protein T09E8.1e protein.
Length = 507
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGA--RAAFSKVVEAIKTNFNERYEELRRHWAGGVL 142
K + + L H+ S + + GA R + ++ TN+ R+ R G +
Sbjct: 39 KNQIAVAPLAHKSRHLSESRDEMRGGAERRGSGGQMNLPAYTNYLIRHSGEER-LVDGPV 97
Query: 141 GNKSNARIAKLEK-AKAREIAQKQ 73
N S+ARIA LEK + E+ QK+
Sbjct: 98 TNASDARIAYLEKRIRELELTQKE 121
>Z81096-4|CAB54264.2| 689|Caenorhabditis elegans Hypothetical
protein T09E8.1b protein.
Length = 689
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGA--RAAFSKVVEAIKTNFNERYEELRRHWAGGVL 142
K + + L H+ S + + GA R + ++ TN+ R+ R G +
Sbjct: 221 KNQIAVAPLAHKSRHLSESRDEMRGGAERRGSGGQMNLPAYTNYLIRHSGEER-LVDGPV 279
Query: 141 GNKSNARIAKLEK-AKAREIAQKQ 73
N S+ARIA LEK + E+ QK+
Sbjct: 280 TNASDARIAYLEKRIRELELTQKE 303
>Z81096-3|CAB54265.2| 747|Caenorhabditis elegans Hypothetical
protein T09E8.1a protein.
Length = 747
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGA--RAAFSKVVEAIKTNFNERYEELRRHWAGGVL 142
K + + L H+ S + + GA R + ++ TN+ R+ R G +
Sbjct: 279 KNQIAVAPLAHKSRHLSESRDEMRGGAERRGSGGQMNLPAYTNYLIRHSGEER-LVDGPV 337
Query: 141 GNKSNARIAKLEK-AKAREIAQKQ 73
N S+ARIA LEK + E+ QK+
Sbjct: 338 TNASDARIAYLEKRIRELELTQKE 361
>Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGA--RAAFSKVVEAIKTNFNERYEELRRHWAGGVL 142
K + + L H+ S + + GA R + ++ TN+ R+ R G +
Sbjct: 454 KNQIAVAPLAHKSRHLSESRDEMRGGAERRGSGGQMNLPAYTNYLIRHSGEER-LVDGPV 512
Query: 141 GNKSNARIAKLEK-AKAREIAQKQ 73
N S+ARIA LEK + E+ QK+
Sbjct: 513 TNASDARIAYLEKRIRELELTQKE 536
>Z78065-10|CAJ80826.1| 691|Caenorhabditis elegans Hypothetical
protein T09E8.1f protein.
Length = 691
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGA--RAAFSKVVEAIKTNFNERYEELRRHWAGGVL 142
K + + L H+ S + + GA R + ++ TN+ R+ R G +
Sbjct: 223 KNQIAVAPLAHKSRHLSESRDEMRGGAERRGSGGQMNLPAYTNYLIRHSGEER-LVDGPV 281
Query: 141 GNKSNARIAKLEK-AKAREIAQKQ 73
N S+ARIA LEK + E+ QK+
Sbjct: 282 TNASDARIAYLEKRIRELELTQKE 305
>Z78065-8|CAD54156.1| 507|Caenorhabditis elegans Hypothetical
protein T09E8.1e protein.
Length = 507
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGA--RAAFSKVVEAIKTNFNERYEELRRHWAGGVL 142
K + + L H+ S + + GA R + ++ TN+ R+ R G +
Sbjct: 39 KNQIAVAPLAHKSRHLSESRDEMRGGAERRGSGGQMNLPAYTNYLIRHSGEER-LVDGPV 97
Query: 141 GNKSNARIAKLEK-AKAREIAQKQ 73
N S+ARIA LEK + E+ QK+
Sbjct: 98 TNASDARIAYLEKRIRELELTQKE 121
>Z78065-7|CAB54297.2| 689|Caenorhabditis elegans Hypothetical
protein T09E8.1b protein.
Length = 689
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGA--RAAFSKVVEAIKTNFNERYEELRRHWAGGVL 142
K + + L H+ S + + GA R + ++ TN+ R+ R G +
Sbjct: 221 KNQIAVAPLAHKSRHLSESRDEMRGGAERRGSGGQMNLPAYTNYLIRHSGEER-LVDGPV 279
Query: 141 GNKSNARIAKLEK-AKAREIAQKQ 73
N S+ARIA LEK + E+ QK+
Sbjct: 280 TNASDARIAYLEKRIRELELTQKE 303
>Z78065-6|CAB54298.2| 747|Caenorhabditis elegans Hypothetical
protein T09E8.1a protein.
Length = 747
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGA--RAAFSKVVEAIKTNFNERYEELRRHWAGGVL 142
K + + L H+ S + + GA R + ++ TN+ R+ R G +
Sbjct: 279 KNQIAVAPLAHKSRHLSESRDEMRGGAERRGSGGQMNLPAYTNYLIRHSGEER-LVDGPV 337
Query: 141 GNKSNARIAKLEK-AKAREIAQKQ 73
N S+ARIA LEK + E+ QK+
Sbjct: 338 TNASDARIAYLEKRIRELELTQKE 361
>AL110485-26|CAB60359.3| 779|Caenorhabditis elegans Hypothetical
protein Y46G5A.17 protein.
Length = 779
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -3
Query: 270 TSVALTNVESGARAAFSKVVEAIKTNFNERYEELRRHWAGGVLGNKSNAR 121
+ V T++ RAAF +++ +T+++ + HWA +L K++ R
Sbjct: 403 SGVNKTSLNDIERAAFVVILDDEETHYDPQDPSKLDHWAHNLLHGKAHDR 452
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,258,940
Number of Sequences: 27780
Number of extensions: 135104
Number of successful extensions: 335
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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