Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O11
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    33   0.012
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    29   0.26 
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   3.2  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    24   9.8  
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    24   9.8  
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    24   9.8  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 33.5 bits (73), Expect = 0.012
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 237 DANAPKRPATAFMMWMNENRKKIVDENP 320
           D N PKR  +AFM +  ENR+K+  +NP
Sbjct: 12  DPNTPKRNMSAFMFFSIENREKMKTDNP 39


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 0.26
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = +3

Query: 30  DEDFNPDKARESDVAEEYDTN 92
           DEDF  +   ESDVAEEYD N
Sbjct: 478 DEDFQAES--ESDVAEEYDEN 496


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +1

Query: 217 SLRNARRTRTHRSVP 261
           +LRNA RTR+H+++P
Sbjct: 174 NLRNASRTRSHQTLP 188


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 258 PATAFMMWMNENRKKIVDENPGY 326
           P   F++W+     KI+D  P Y
Sbjct: 208 PRGGFLVWVETKFSKIIDAIPNY 230


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 319 PAIKVTEIAKKAGELWRD 372
           P+I  ++++K  GE+WR+
Sbjct: 126 PSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 319 PAIKVTEIAKKAGELWRD 372
           P+I  ++++K  GE+WR+
Sbjct: 126 PSINNSQVSKLVGEMWRN 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 866,109
Number of Sequences: 5004
Number of extensions: 8053
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)