Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O11
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217           36   0.009
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312...    32   0.19 
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560...    31   0.34 
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662...    28   3.1  
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449...    28   3.1  
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...    27   7.2  

>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
          Length = 504

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +3

Query: 237 DANAPKRPATAFMMWMNENRKKIVDENPG 323
           D N PK+PA++F+++  E R+++ +E PG
Sbjct: 410 DPNRPKKPASSFLLFSKEARRQLAEERPG 438


>01_06_0175 +
           27229878-27230056,27231102-27231159,27231230-27231274,
           27232711-27232791,27232884-27232922
          Length = 133

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 237 DANAPKRPATAFMMWMNENRKKIVDENP 320
           D   PK+P TAF  +M + RK   +ENP
Sbjct: 45  DRRRPKKPPTAFFYFMEDFRKTYKEENP 72


>09_06_0203 +
           21555747-21555805,21555862-21555939,21556034-21556091,
           21556191-21556235,21556514-21556549,21556855-21556935,
           21557016-21557087,21557184-21557195
          Length = 146

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 237 DANAPKRPATAFMMWMNENRKKIVDENP 320
           D N PKRP +AF ++M + RK   +++P
Sbjct: 31  DPNKPKRPPSAFFVFMEQFRKDYKEKHP 58


>08_01_0008 -
           65366-65497,65588-65759,65846-65972,66058-66140,
           66232-66329
          Length = 203

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 240 ANAPKRPATAFMMWMNENRKKIVDENP 320
           A   KRP TAF ++M++ RK+   E+P
Sbjct: 89  AKKGKRPPTAFFLFMSDFRKEYKAEHP 115


>01_01_0605 +
           4497308-4497472,4497719-4497904,4498898-4499003,
           4499062-4499216,4499341-4499424,4499498-4499589,
           4499729-4499837,4499944-4500030,4500153-4500245,
           4501144-4501341,4501481-4501632,4501724-4501874,
           4501975-4502073,4502159-4502326,4502624-4502702,
           4502870-4503000
          Length = 684

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 319 PAIKVTEIAKKAGELWRDL 375
           P +  TEIAKK GE+W+ +
Sbjct: 622 PDLPTTEIAKKLGEMWQKM 640



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 237 DANAPKRPATAFMMWMNENRKKIVDENP 320
           D NAPKR  T FM +    R  + + NP
Sbjct: 595 DPNAPKRAMTPFMYFSMAERGNMKNNNP 622


>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 237 DANAPKRPATAFMMWMNENRKKIVDENP 320
           D NAPKR    FM +    R  + + NP
Sbjct: 554 DPNAPKRAIAPFMYFSKAERANLKNSNP 581



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 319 PAIKVTEIAKKAGELWRDL 375
           P +  TEIAKK GE W+ +
Sbjct: 581 PELATTEIAKKLGERWQKM 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,657,119
Number of Sequences: 37544
Number of extensions: 54130
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)