Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O10
(197 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 0.60
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 1.4
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 1.8
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 25 1.8
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 24 3.2
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 23 4.2
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 23 5.6
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 23 5.6
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 23 5.6
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 23 7.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 22 9.7
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 22 9.7
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 0.60
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 67 RVVISIFILSIFLNTEAKVYTRCQLTRELLKNSFSRTFLS 186
R I+I ++ IFL A++YT L + LL +T L+
Sbjct: 375 RFQITIMVIIIFLRNLAELYTTSSLDQPLLTFKRLKTLLA 414
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 65 PYSMTAIVPKFLASHGGSTKF 3
PY++ + P F SH ST F
Sbjct: 104 PYNLLSNTPSFTTSHSSSTTF 124
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 1.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 173 LEKLFFNSSRVSWHRV*TFASVFRNIERMKIEITTRPYSMTAIVP 39
L F ++VS HR+ A F+N+E E T+ P I P
Sbjct: 74 LADTFHTKAKVSKHRIQNLAQQFQNVECWFKE-TSTPEKSAFITP 117
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 37 FGTMAVMEYGRVVISIFILSIFLNTEAKVYTRC 135
FG +A+ R +IF + +LN AK+Y C
Sbjct: 316 FGWLALTHALRKKGAIFPIHAYLNFNAKLYEEC 348
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 127 CKLLLQYLGILKE*KLK*QHVRTP 56
C L ++ LGIL + + + +H++TP
Sbjct: 198 CNLAIKNLGILLKKEFRVRHMKTP 221
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 7 LVDPPWLARNFGTMAVM 57
L+DP W+A G M M
Sbjct: 320 LIDPKWIANKAGNMDAM 336
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 6 LSGSPVACKEFRHD 47
L G + CK FRHD
Sbjct: 10 LKGDTLICKTFRHD 23
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.0 bits (47), Expect = 5.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 51 SHGVRTCCY 77
SHG+ TCCY
Sbjct: 643 SHGLPTCCY 651
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 4 NLVDPPWLARNFGTMAVMEY 63
N+VDP WL +G + Y
Sbjct: 333 NVVDPFWLIEKYGVDTIRYY 352
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 94 SIFLNTEAKVYTRCQLTRELLKNS 165
S F+ E K+Y + R LL+N+
Sbjct: 306 SNFMENEKKLYEKVNTNRTLLRNA 329
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -3
Query: 63 VLHDCHRAEIPCKP 22
V H+CH PC P
Sbjct: 657 VKHNCHPTSEPCPP 670
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3
Query: 66 SVLHDCHRAEI 34
SVLHDCH AEI
Sbjct: 83 SVLHDCH-AEI 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,975
Number of Sequences: 5004
Number of extensions: 11753
Number of successful extensions: 37
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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