Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O10
         (197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0720 - 22510996-22512949,22513752-22514533                       27   2.1  
04_04_0240 + 23851859-23851917,23852018-23852087,23852177-238533...    26   4.8  
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873...    26   4.8  
10_01_0268 + 2864524-2864871                                           25   8.5  
06_03_1411 - 29981153-29981407,29982072-29982308,29982975-299833...    25   8.5  
01_06_1191 - 35297005-35297473,35297812-35298965                       25   8.5  

>12_02_0720 - 22510996-22512949,22513752-22514533
          Length = 911

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 3   ELSGSPVACKEFR-HDGSHGVRTCCYFNFHSFNIPKY 110
           EL G P   K+   H G+   R+  YF+ +S+ +P +
Sbjct: 808 ELEGDPFRLKQLTIHRGACAFRSLKYFHLYSYMMPSF 844


>04_04_0240 +
           23851859-23851917,23852018-23852087,23852177-23853394,
           23853504-23854040
          Length = 627

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 16  PPWLARNFGTMAVMEYGRVVISI 84
           PPW AR+   + V  Y RV++++
Sbjct: 186 PPWWARDISELGVDLYWRVMVAV 208


>01_06_1513 -
           37884198-37884485,37884966-37886951,37886976-37887305,
           37887397-37887471,37887543-37887734,37887922-37888173,
           37888248-37888803,37888881-37889088,37889624-37889736,
           37890029-37890060,37890545-37890619
          Length = 1368

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 39  RHDGSHGVRTCCYFNFHSFNI 101
           R  G++G R  C++ FH+F++
Sbjct: 281 RRVGNNGFRKVCFWQFHNFHM 301


>10_01_0268 + 2864524-2864871
          Length = 115

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 82  IFILSIFLNTEAKVYTRCQLTRELLKNS 165
           IF+L++F    A   T CQ   E+LK +
Sbjct: 14  IFLLAVFTTAAAAAGTECQNDVEVLKTT 41


>06_03_1411 -
           29981153-29981407,29982072-29982308,29982975-29983342,
           29983448-29983604,29983646-29983708
          Length = 359

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 42  HDGSHGVRTCCYFNFHSFN 98
           +DG  G  T CY N H F+
Sbjct: 52  YDGHGGPETACYINDHLFH 70


>01_06_1191 - 35297005-35297473,35297812-35298965
          Length = 540

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 76  ISIFILSIFLNTEAKVYTRCQLTRELLKNSFSRTFL 183
           +++ + + +L   AKVYT    T   L NS ++T+L
Sbjct: 136 VAVSLATSYLGLSAKVYTSLAETFPGLANSKTKTYL 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,217,699
Number of Sequences: 37544
Number of extensions: 74837
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)