Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O10
         (197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039051-4|AAB94264.1|  539|Caenorhabditis elegans Hypothetical ...    29   0.34 
Z68317-3|CAA92687.1|  599|Caenorhabditis elegans Hypothetical pr...    28   0.80 
U61954-12|AAK29807.1|  274|Caenorhabditis elegans Fatty acid elo...    25   5.6  
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U80451-5|AAB37840.1|  277|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AC024841-2|AAK68540.1|  300|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC024841-1|AAK68541.1|  300|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AF039051-4|AAB94264.1|  539|Caenorhabditis elegans Hypothetical
           protein C14C6.6 protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 22  WLARNFGTMAVMEYGRVVISIFILSIFLNTEAKVYTRCQLTRELLKNSFSRT 177
           W+ ++  T A  +  + VI+IFI+ I++          QLTRE+L N +  T
Sbjct: 361 WVLKHNNTPATYKNEKQVIAIFIVKIYMKL-------VQLTREMLFNKYQNT 405


>Z68317-3|CAA92687.1|  599|Caenorhabditis elegans Hypothetical
           protein T01H3.3 protein.
          Length = 599

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = +1

Query: 25  LARNFGTMAVMEYGRVVISIFILSIFLNTEAKVYTRCQLTRELLKNSFSRTF 180
           L + FG   V     V  +I IL +FL  + + Y    LTR LL  SFS  F
Sbjct: 220 LIKKFGVRKVFSICMVQSTILIL-LFLYVQKRSYIFLLLTRFLLGFSFSSVF 270


>U61954-12|AAK29807.1|  274|Caenorhabditis elegans Fatty acid
           elongation protein 6 protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 16  PPWLARNFGTMAVMEYGRVVISIFIL 93
           P W+A+N  TM ++++   VI+ FIL
Sbjct: 191 PAWIAKNITTMQILQF---VITHFIL 213


>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
           protein T05A7.11 protein.
          Length = 1200

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 96  NIPKY*SKSLHAMPTNP*TVKE-QFLKDI 179
           N+PKY    LH  PT P T +  +F K++
Sbjct: 326 NVPKYIKIDLHLFPTVPKTTQTVKFFKNL 354


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 70  VVISIFILSIFLNTEAKVYTRCQLTRELLKN 162
           ++I+IF+L +FL  E + +   +  + LLK+
Sbjct: 3   ILINIFVLLLFLPQENRYFVELRSLKNLLKS 33


>U80451-5|AAB37840.1|  277|Caenorhabditis elegans Hypothetical
          protein F11G11.9 protein.
          Length = 277

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 7  LVDPPWLARNFGTMAVME 60
          +V+P W+ +NFG + +++
Sbjct: 6  IVEPKWVVQNFGNIRILD 23


>AC024841-2|AAK68540.1|  300|Caenorhabditis elegans Hypothetical
          protein Y59H11AM.2 protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 7  LVDPPWLARNFGTMAVME 60
          +V+P W+ +NFG + +++
Sbjct: 6  IVEPKWVVQNFGNIRILD 23


>AC024841-1|AAK68541.1|  300|Caenorhabditis elegans Hypothetical
          protein Y59H11AM.3 protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 7  LVDPPWLARNFGTMAVME 60
          +V+P W+ +NFG + +++
Sbjct: 6  IVEPKWVVQNFGNIRILD 23


>Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical
           protein C31C9.8 protein.
          Length = 390

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 7   LVDPPWLARNFGTMAVMEYGRVVISIFILSIFLNTE 114
           LV   W +RN   M+ ME  +  +   +L+ F+N E
Sbjct: 188 LVLTSWTSRNGRLMSCMESTKPSVKKLVLNTFINHE 223


>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 70  VVISIFILSIFLNTEAKVYTRCQLTRELLKNSFSRTFLS 186
           +V+ IF+LSIF  +       C L     ++S S TFL+
Sbjct: 1   MVLQIFVLSIFFISLFNKAIACPLGCSCNESSISCTFLT 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,373,405
Number of Sequences: 27780
Number of extensions: 65884
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)