Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O10
         (197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   0.80 
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   0.80 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   0.80 

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 0.80
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 69  TSVLHDCHRAEIPCK 25
           T VL DCH A I CK
Sbjct: 358 TPVL-DCHTAHIACK 371


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 0.80
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 69  TSVLHDCHRAEIPCK 25
           T VL DCH A I CK
Sbjct: 69  TPVL-DCHTAHIACK 82


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 0.80
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 69  TSVLHDCHRAEIPCK 25
           T VL DCH A I CK
Sbjct: 358 TPVL-DCHTAHIACK 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,127
Number of Sequences: 438
Number of extensions: 766
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)