Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O09
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   0.86 
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   2.0  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    25   4.6  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    25   4.6  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.1  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    25   6.1  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 90  CTDVGTGFSRLPMRSRRDGGTCTSWSFTARFSPAAGKP 203
           C+D  TG S +P+R   D     +W  TA +    G P
Sbjct: 484 CSDFSTGISVIPIRLLTDAD--RTWLVTAEYGGTGGLP 519


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 107 RFQSTTNAISTRWRNLYVMELHSS 178
           RF++T+N +S  WR+ ++M + S+
Sbjct: 57  RFENTSNFVSRDWRDWFIMGVIST 80


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 89  LYRRRNRFQSTTNAISTRWRNLYV 160
           +Y   N  ++TT A  T WRN+++
Sbjct: 212 VYEDNNIDENTTEAAHTSWRNVFL 235


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 331 EQNKNAATRYRQKKKAEVEVL 393
           E+N+ AA+++RQKKK  ++ L
Sbjct: 18  ERNRIAASKFRQKKKEWIKEL 38


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 384 DLSLFLLAVAGGCIFILLLFTR 319
           ++  FL AV  GC FI++ F R
Sbjct: 614 NMIFFLSAVIYGCCFIIIFFMR 635


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 36  FTRARDSFGGTSRPLASYCTDVGTGFSRL 122
           F R +D   G+ RPL +   D G GF RL
Sbjct: 227 FNREKD---GSLRPLPNRHVDTGMGFERL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.126    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,078
Number of Sequences: 5004
Number of extensions: 28785
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)