Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O09
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 33 0.089
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 30 0.63
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 30 0.83
06_03_0467 - 21066354-21066501,21066831-21066893,21067223-210672... 29 1.4
08_02_0328 - 15831060-15831287 29 1.9
03_05_0546 + 25429140-25429480,25430539-25431676 28 2.5
08_02_0362 - 16230672-16230994,16231120-16231164,16231999-162320... 28 3.3
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779... 27 4.4
02_05_1029 + 33614888-33615082,33615184-33615243,33615332-336154... 27 4.4
11_01_0124 + 975921-976589,1010229-1011290 27 5.8
07_01_0013 - 99952-100413,100534-100704 27 5.8
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589... 27 5.8
12_02_0584 + 20819822-20820970,20821394-20821618,20821776-208219... 27 7.7
04_03_0094 - 11113279-11114469 27 7.7
>07_03_0572 - 19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 33.1 bits (72), Expect = 0.089
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 65 HLKTIGQLLYRRRNRFQSTTNAISTRWRNLYVMELHSSILPCRWEARTS 211
H K + +LL N + N S RWR ++V LH LP W + S
Sbjct: 952 HGKQVVELLLS--NGGEEAINQFSQRWRQVFVASLHPRYLPSGWNIKHS 998
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 30.3 bits (65), Expect = 0.63
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 105 TGFSRLPMRSRRDGGTCTSWSFTARFSPAAGKPER 209
T F+RLP+R DGG T F A +P G R
Sbjct: 124 TTFARLPLRDSPDGGDLTIGHFDAGVAPQEGLRSR 158
>01_07_0019 + 40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 29.9 bits (64), Expect = 0.83
Identities = 31/74 (41%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGLRPAGTMYYFTRARDSFGGT-SRP-LASYCTDVGTGFSRLPMRSRRDGGTCTSWSFTA 176
RG A T Y A D F T +RP LAS T + T +SRLP R+ G W A
Sbjct: 852 RGAAEAVTDAYMRSAVDYFEATRARPSLAS--TLLITAWSRLPFRAADFG-----WGPPA 904
Query: 177 RFSPAAGKPERHTA 218
+ PAA PER A
Sbjct: 905 AYGPAA-LPEREVA 917
>06_03_0467 -
21066354-21066501,21066831-21066893,21067223-21067291,
21067666-21067742,21069451-21069558,21070008-21070274,
21071964-21072607,21073370-21073550,21073688-21073834
Length = 567
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 269 RDRLAQNHIHGPSMTVVLVKRSRIKMQPPATA 364
+D L+++ H PS R R K+QPPA A
Sbjct: 113 KDGLSRHFFHRPSKAYTTGTRKRRKIQPPAAA 144
>08_02_0328 - 15831060-15831287
Length = 75
Score = 28.7 bits (61), Expect = 1.9
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = +3
Query: 39 TRARDSFGGTSRPLASYC---TDVGTGFSRLPMRSRRDGGTCTSWSF--TARFSPAAGKP 203
TR RPL C D G G S R GG+ WS+ TARF P G P
Sbjct: 4 TRRERGGDPVDRPLGGLCGVEDDGGDGVSGSGGGKARAGGSNGRWSWHPTARFPPHPGVP 63
>03_05_0546 + 25429140-25429480,25430539-25431676
Length = 492
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 108 GFSRLPMRSRRDGGTCTSWSFTARFSPAAGKPERHTAFITAVITAVLL 251
GF L +++++D T + +FT + P+A R A V TA+L+
Sbjct: 436 GFQGLAVQTQQDPST-NACNFTIQIEPSAAAGRRPAAVAVTVATAMLI 482
>08_02_0362 -
16230672-16230994,16231120-16231164,16231999-16232049,
16232489-16232696
Length = 208
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 150 TCTSWSFTARFSPAAGKPERHTAFITAVITAVLLHR*GMVGTVSPKTIFTVRR 308
+CT WS PAAG H F+ A + V+LH+ + SP T RR
Sbjct: 7 SCTGWS------PAAGGASAH-FFLPAAVIVVVLHQLAVWPPPSPHTAADGRR 52
>03_02_0359 -
7788382-7788522,7788931-7789837,7791227-7791337,
7791437-7791507,7791582-7791659,7792564-7792770,
7792867-7793046,7793249-7793471,7794133-7794453,
7794538-7795109
Length = 936
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 130 DLDAMEELVRHGASQLDSPLPLGSP 204
DL +E RHG S + P P+G P
Sbjct: 866 DLPQKDEDARHGTSDTNDPTPVGLP 890
>02_05_1029 +
33614888-33615082,33615184-33615243,33615332-33615403,
33615484-33615659,33615749-33615909,33616122-33616180,
33616269-33616315,33616449-33616589,33616838-33616929,
33616977-33616984
Length = 336
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 364 GGSGWLHFYSAPFYENDGHRRTVNMVLGETVPTIPHRW 251
GGS LHF + GH R + +VL + VP++P+ W
Sbjct: 118 GGSA-LHFAAL-----HGHARCLRLVLADYVPSMPNFW 149
>11_01_0124 + 975921-976589,1010229-1011290
Length = 576
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 340 YSAPFYENDGHRRTVNMVLG-ETVPTIPHRWRRTAVMTAVMN 218
Y + FYE DG R T V+G T+P++ +R R ++ + N
Sbjct: 324 YLSQFYE-DGARYTHGKVVGLRTIPSVVNRIMRATILPRLGN 364
>07_01_0013 - 99952-100413,100534-100704
Length = 210
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 66 TSRPLASYCTDVGTGFSRLPMRSRRDGGTCTSWSFTARFSPAAGKPERH 212
T+R LA+ G G + P R R GG + AR + PERH
Sbjct: 4 TNRMLATKPRGDGKGREQGPSRQRLQGGHYAFCTTIARLTRMGFHPERH 52
>01_05_0416 +
21956050-21956512,21958001-21958065,21958772-21958933,
21959006-21959107
Length = 263
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 266 GRDRLAQNHIHGPSMTVVLVKRSRIKMQPPATAKRK 373
G L NH+ G + V K SR++ PP +R+
Sbjct: 99 GTQDLGVNHVSGEELLVSRDKTSRLRQPPPRYHQRR 134
>12_02_0584 +
20819822-20820970,20821394-20821618,20821776-20821907,
20822511-20822534
Length = 509
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 122 TNAISTRWRNLYVM 163
T+A+STRWRNL+ +
Sbjct: 44 TSALSTRWRNLWTL 57
>04_03_0094 - 11113279-11114469
Length = 396
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 74 TIGQLLYRRRNRFQSTTNAISTRWRNLY 157
T+ ++LY + + T+A+S RWRN++
Sbjct: 17 TLARVLYHLGSVNATVTSALSRRWRNVH 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.308 0.126 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,802,697
Number of Sequences: 37544
Number of extensions: 245007
Number of successful extensions: 484
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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