Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O09
(411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical... 33 0.061
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 32 0.14
Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical pr... 30 0.75
Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical pr... 30 0.75
Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical pr... 30 0.75
U23177-1|AAA64332.1| 431|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z83127-5|CAB05628.2| 575|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical pr... 27 5.3
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 9.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 9.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 9.2
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 26 9.2
AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (... 26 9.2
>AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical
protein W08E12.1 protein.
Length = 228
Score = 33.5 bits (73), Expect = 0.061
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +1
Query: 325 KKEQNKNAATRYRQKKKAEVEVLLNEEQA 411
K++QNK AA RYR K+KA+ + LL++ +A
Sbjct: 167 KRQQNKVAAARYRDKQKAKWQDLLDQLEA 195
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1
Query: 325 KKEQNKNAATRYRQKKKAEVE 387
KK QN+ AATRYR+KK+ E E
Sbjct: 144 KKAQNRLAATRYREKKRREKE 164
>Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical
protein C07G2.2c protein.
Length = 509
Score = 29.9 bits (64), Expect = 0.75
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 331 EQNKNAATRYRQKKKAEVEVLLNEEQA 411
E+NK AA RYR++KK E + ++ QA
Sbjct: 399 ERNKAAAVRYRKRKKEEHDDMMGRVQA 425
>Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical
protein C07G2.2b protein.
Length = 460
Score = 29.9 bits (64), Expect = 0.75
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 331 EQNKNAATRYRQKKKAEVEVLLNEEQA 411
E+NK AA RYR++KK E + ++ QA
Sbjct: 350 ERNKAAAVRYRKRKKEEHDDMMGRVQA 376
>Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical
protein C07G2.2a protein.
Length = 457
Score = 29.9 bits (64), Expect = 0.75
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 331 EQNKNAATRYRQKKKAEVEVLLNEEQA 411
E+NK AA RYR++KK E + ++ QA
Sbjct: 350 ERNKAAAVRYRKRKKEEHDDMMGRVQA 376
>U23177-1|AAA64332.1| 431|Caenorhabditis elegans Hypothetical
protein C56G2.5 protein.
Length = 431
Score = 27.9 bits (59), Expect = 3.0
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 9 LRPAGTMYYFTRARDSFGGTSRPLASYCTDVGTGFSRLPMRSRRDGGTCTSWSFTARFSP 188
L P GT+++ T D + L CTD G S+L + R+ G S T +SP
Sbjct: 326 LIPEGTLHFQTTYSDPEQSMEKKLGDTCTD---GVSKLAVSMRKSGSVLARGSKTF-YSP 381
>Z83127-5|CAB05628.2| 575|Caenorhabditis elegans Hypothetical
protein T23F6.5 protein.
Length = 575
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 123 PMRSRRDGGTCTSWSFTARFSPAAGKP 203
P S RD C +W F+ F +G+P
Sbjct: 103 PSLSCRDASACGTWQFSREFEWYSGRP 129
>Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical
protein C17G1.6a protein.
Length = 765
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 358 SGWLHFYSAPFYENDGHRRTVNMVLGET 275
SGW+H + P Y+ DG T + ET
Sbjct: 485 SGWIHIKNPPLYKPDGQIYTSDEQSAET 512
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = -3
Query: 175 AVKLHDVQ--VPPSRRDRIGSRLKPVPTSVQ*LANGLEVP----PKESRAR 41
A +L ++Q PP R + G L P PT V L E P P SR+R
Sbjct: 2361 AERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKSDETPAPVRPPRSRSR 2411
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = -3
Query: 175 AVKLHDVQ--VPPSRRDRIGSRLKPVPTSVQ*LANGLEVP----PKESRAR 41
A +L ++Q PP R + G L P PT V L E P P SR+R
Sbjct: 2361 AERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKSDETPAPVRPPRSRSR 2411
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = -3
Query: 175 AVKLHDVQ--VPPSRRDRIGSRLKPVPTSVQ*LANGLEVP----PKESRAR 41
A +L ++Q PP R + G L P PT V L E P P SR+R
Sbjct: 2361 AERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKSDETPAPVRPPRSRSR 2411
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 159 SWSFTARFSPAAGKPERHTAFITAVITA 242
SW +A S AA PER F + ++T+
Sbjct: 630 SWLHSASTSAAAAAPERSEMFTSPIVTS 657
>AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (grd
related) protein 5 protein.
Length = 220
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 388 PRPQPFSFGGSGWLHFYSAPFYENDG 311
P P P GG G+ YSAP + G
Sbjct: 35 PPPPPSPCGGGGYARAYSAPTFTAGG 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.308 0.126 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,256,544
Number of Sequences: 27780
Number of extensions: 179301
Number of successful extensions: 305
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -