Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O09
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   0.77 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   0.77 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   4.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 2   QRVTPSRHNVLLH-SRP*FLWWHLKTIGQLLYRRRNRFQSTTNAISTRWRNLYVMELHSS 178
           +++  + +NV LH S P  ++  L+ +  L++   +   S+T+ +   WR    +E+ +S
Sbjct: 459 KQILSAAYNVELHNSSPFSIYSFLERLN-LIFMSSSLQWSSTHTLDVAWRRKVTIEILNS 517

Query: 179 I 181
           +
Sbjct: 518 L 518


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 2   QRVTPSRHNVLLH-SRP*FLWWHLKTIGQLLYRRRNRFQSTTNAISTRWRNLYVMELHSS 178
           +++  + +NV LH S P  ++  L+ +  L++   +   S+T+ +   WR    +E+ +S
Sbjct: 497 KQILSAAYNVELHNSSPFSIYSFLERLN-LIFMSSSLQWSSTHTLDVAWRRKVTIEILNS 555

Query: 179 I 181
           +
Sbjct: 556 L 556


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 283 GETVPTIPHRWRRTAVMTAVMNAV 212
           G+ +PT+P+    T   T V N +
Sbjct: 224 GDAIPTVPYTETETETWTRVFNTL 247


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 116  TETGSDVGTVTGQWS*G 66
            T +GSD G+  G W+ G
Sbjct: 1067 TSSGSDSGSSNGSWTAG 1083


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 329 FLRERRSSTDREYGFGRDGPDH 264
           FL ER     + Y FGRD  DH
Sbjct: 295 FLCERHQ---KRYFFGRDSVDH 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.126    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,669
Number of Sequences: 438
Number of extensions: 2097
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.8 bits)