Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O08
(504 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 243 1e-65
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 109 2e-25
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 105 4e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 63 2e-11
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 29 0.40
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.69
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 28 0.69
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 4.9
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 6.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 243 bits (594), Expect = 1e-65
Identities = 106/137 (77%), Positives = 125/137 (91%)
Frame = +1
Query: 10 FDAKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAV 189
FDA NMM A DPRHGRYLTVA +FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AV
Sbjct: 294 FDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAV 353
Query: 190 CDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES 369
C +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAES
Sbjct: 354 CSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 370 HMNDLISEYQQYQEAAI 420
+MNDL+SEYQQYQEA I
Sbjct: 414 NMNDLVSEYQQYQEAGI 430
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 109 bits (262), Expect = 2e-25
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 8/139 (5%)
Frame = +1
Query: 10 FDAKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAV 189
F+ N M CDPR GRY+ ++RG + ++V + I+ K + FV+W P K +
Sbjct: 296 FEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGI 355
Query: 190 CDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 345
CD PP+ ++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E
Sbjct: 356 CDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEE 415
Query: 346 MEFTEAESHMNDLISEYQQ 402
EF+EA + L +Y++
Sbjct: 416 GEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 105 bits (252), Expect = 4e-24
Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 8/139 (5%)
Frame = +1
Query: 10 FDAKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAV 189
F+ N M CDPR GRY+ ++RG + ++V + +I+++ + FV+W P K +
Sbjct: 300 FEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGI 359
Query: 190 CDIPPRGL--------KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 345
C PP+ + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E
Sbjct: 360 CYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEE 419
Query: 346 MEFTEAESHMNDLISEYQQ 402
EF+EA + L +Y++
Sbjct: 420 GEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 63.3 bits (147), Expect = 2e-11
Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Frame = +1
Query: 19 KNMMAACDP-RHGRYLTVATIFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCD 195
KN M + +P + ++++ I +G +V + ++ I+ + + F+ W P +++ A+
Sbjct: 303 KNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSK 362
Query: 196 IPP---RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAE 366
P +++ + N T+I LFKR +Q+ + +R AFL Y E + E + E +
Sbjct: 363 KSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFD 422
Query: 367 SHMN---DLISEYQQYQE 411
S + DLI+EY+ ++
Sbjct: 423 SSRDVVADLINEYEACED 440
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.40
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +2
Query: 302 ARHSCTGTPARAWTKWSSRRRRAT*TILYLNT------SSIKKRPSMKTPSSTRN*SKKR 463
+ H TP+ A K +++RR ++ NT +KK P+ K ST+ K
Sbjct: 562 SEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKNT 621
Query: 464 YTTTLF 481
+T LF
Sbjct: 622 QSTLLF 627
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.69
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 238 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 345
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 0.69
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 76 IFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 249
++ + ++ + + +MNI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 250 IQELFK 267
+EL++
Sbjct: 403 KEELYE 408
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 55 RYLTVATIFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPN 171
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 115 QMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 237
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,651
Number of Sequences: 5004
Number of extensions: 28772
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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