Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O06
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    57   8e-10
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    54   1e-08
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    32   0.027
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    30   0.11 
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    27   0.78 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   2.4  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   3.1  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    25   4.1  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   5.5  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    24   7.2  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    24   7.2  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    24   7.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    24   7.2  

>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 57.2 bits (132), Expect = 8e-10
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
 Frame = +1

Query: 187 GRIKCTLIPGDGVGPELVYSVQEVFKASSIPVDFESFFFSEV--NPTLSAPLEDVVNSIA 360
           G    T+I GDG+GPE+  SV+ +FKA+ +P+++E      +  N T + P +D   S+ 
Sbjct: 44  GNYTVTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIP-DDAKESVR 102

Query: 361 KNKICIKG 384
           KNK+ +KG
Sbjct: 103 KNKVALKG 110


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
 Frame = +1

Query: 187 GRIKCTLIPGDGVGPELVYSVQEVFKASSIPVDFESFFFSEV---NPTLSAPLEDVVNSI 357
           G+   TLIPGDG+G E   +V E+FK +++P++FE    + +   N +    L + + S+
Sbjct: 19  GKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSL 78

Query: 358 AKNKICIKG 384
            +NK+ +KG
Sbjct: 79  KRNKVGLKG 87


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 32.3 bits (70), Expect = 0.027
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +1

Query: 34  PFSKGIWQILRMSLISRNVFRALVQGSQHIGNGVHTSSVNTERNQPNATKEGRIKCTLIP 213
           P  KG   IL   +  RN F  L   ++  GNG  T S  T +NQP + ++ R+    + 
Sbjct: 182 PMDKGQRTILHQFI--RNNFSGLESSTK--GNGTFTVSKTTRKNQPRSRRDPRLSWKALG 237

Query: 214 GD 219
           G+
Sbjct: 238 GE 239


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 196 KCTLIPGDGVGPELVYSVQEVFK 264
           K  ++PGD +GPE+V S  EV K
Sbjct: 5   KIVVLPGDHIGPEIVASALEVLK 27


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
 Frame = +1

Query: 217 DGVGPELVYSVQEVFKASSIPVD-------FESFFFSEVN--PTLSAPLEDVVNSIAKNK 369
           DG GP L +   E  K    PVD       F+    S+++  P +  P+E    +IAK  
Sbjct: 415 DGYGPTLHFPPSEALKLWGYPVDESDITSLFQKHIMSDISAIPWIDEPVEVETKTIAKYL 474

Query: 370 ICIKG 384
           + + G
Sbjct: 475 LKLNG 479


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 228 SYAIPRNKGTLNTTFFCRIGLISLSVYRTC 139
           SYA+ R+ G+ + T F +I  +    Y TC
Sbjct: 797 SYALKRSSGSNDNTIFVKITDLGYEHYPTC 826


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 323 KVGFTSEKKKDSKSTGMLDALKTSCTEYT-NSGPT 222
           K+ +TS   +   S G +   KT  T YT NS P+
Sbjct: 654 KLSYTSHNGRHGGSNGNISGAKTPMTNYTINSMPS 688


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 247 VQEVFKASSIPVDFESFFFSEVNPTLSAPLEDVVNSI 357
           ++ V  A++  +DF +  FS        PLED+ N++
Sbjct: 23  IRFVTPATTDSMDFTAISFSWEESNTGIPLEDITNTV 59


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -3

Query: 375 TDLVLSDRIDDILQRCT*SWIHFGKEERLKINGNA*CLKNLL 250
           ++ +L +R  ++L+    SW +   E   ++N ++ CL+  L
Sbjct: 266 SESILDERAKNVLKLVKHSWQNTEAENHCELNNDSSCLREAL 307


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 350 LTTSSNGALKVGFTSEKKKDSKSTGMLDALKTSCTEY-TNSGPTPSPGIRVHLIRPS 183
           +T  ++G  K   T+ K+K  K  G L  L TS +    +S PT +P   + + +PS
Sbjct: 127 VTLQNDGGSK-NTTARKQKQLKKNG-LRPLNTSASRIGLSSSPTNTPSPNLPVSQPS 181


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 RIKCTLIPGDGVGPELVYSVQEVFK 264
           RI   LIP DG+G E+V + + + +
Sbjct: 6   RIVLGLIPADGIGKEVVPAARRLME 30


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
 Frame = +1

Query: 61  LRMSLISRNVFRALVQGSQHIG--NGVHTSSVNTERNQPNATKEGRIKCTLIPG----DG 222
           +R + + R  + A V  S   G  NG   SS   ER   + + E +  C L PG    + 
Sbjct: 62  IRRNRLLRGSYAAGVSSSAMNGFVNGTQISSTPAEREYYSKSDEIKNICGLPPGPMKVEQ 121

Query: 223 VGPELVYSVQEVFKASSIPVDFESFFF 303
           +G  + + V E      +    ++ FF
Sbjct: 122 IGHAIDHLVSETHTVDHLGSSIKASFF 148


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 280 RECLMP*KPPVLNILTQVLRHPP 212
           +EC +   PPVLNI  + L  PP
Sbjct: 248 KECPISTAPPVLNIGDRSLETPP 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,717,422
Number of Sequences: 5004
Number of extensions: 35653
Number of successful extensions: 90
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)