Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O06
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0662 + 5714108-5714147,5714336-5715669,5716482-5716673,571... 31 0.42
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 28 2.2
08_02_0706 + 20205305-20205331,20205475-20205592,20206235-202064... 28 3.0
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 27 5.2
05_02_0142 - 7052040-7052759 27 5.2
05_05_0187 - 23094816-23095466 27 6.9
06_03_0756 + 24244313-24244999 26 9.1
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935... 26 9.1
>08_01_0662 +
5714108-5714147,5714336-5715669,5716482-5716673,
5716769-5716958,5717398-5717477
Length = 611
Score = 30.7 bits (66), Expect = 0.42
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = -1
Query: 383 PLIQILFLAIELTTSSNGALKVGFTSEKKKDSKSTGMLDALKTSCTEYTNSGPTPSPGIR 204
P +++LFL +EL+ S+ A+ +GF E K+ S + L+ + C++ R
Sbjct: 511 PNLEMLFLKLELSYSNKEAINIGF--ELKERSFACKNLEVVNIRCSKDDE---------R 559
Query: 203 VHLIRPSFVALG 168
VH++ FVA G
Sbjct: 560 VHMLAEIFVANG 571
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 28.3 bits (60), Expect = 2.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 193 YDLLLSHWVDFSQCLPNL 140
Y ++LS +VD S+CLP+L
Sbjct: 768 YHMMLSEYVDISKCLPSL 785
>08_02_0706 +
20205305-20205331,20205475-20205592,20206235-20206416,
20206505-20206612,20206717-20206781,20207152-20207257,
20207592-20207675,20208540-20208668,20208974-20209041,
20209674-20209846,20210371-20210444,20210515-20210628,
20210834-20210920,20211028-20211119,20211205-20211307
Length = 509
Score = 27.9 bits (59), Expect = 3.0
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 124 GNGVHTSSVNTERNQPNATKEGRIKCTLIPGDGVGPELVYSVQEVFKASSIPVDFESFFF 303
G + + SV+ + N + G + C L+ D +G V++ F A S P D ++ F
Sbjct: 189 GKSLSSISVHDDFAVLNLSDGGSLPCRLVI-DAMG-NFSPIVRQGFPAGSGPTDRTTYMF 246
Query: 304 SEVNPTLSAP-LEDVVNS 354
+ V+P P LE+++ +
Sbjct: 247 TYVDPHSGGPKLEELLET 264
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -1
Query: 353 ELTTSSNGALKVGFTSEKKKDSKSTGML--DALKTSC--TEYTNSGPTPS 216
E + N LK+ E+ +D GML + K C T ++SGP PS
Sbjct: 205 ETSKDENERLKINLAEEEDEDEPLKGMLVGEKDKNECLKTMRSSSGPCPS 254
>05_02_0142 - 7052040-7052759
Length = 239
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 290 SKSTGMLDALKTSCTEYTNSGPTPSPGIRVHLIRPSFVALG 168
+ S G D S TE +GPTP RV +RP V+ G
Sbjct: 119 ASSLGTRDVHAVS-TEVDRAGPTPRQAYRVEAVRPVPVSGG 158
>05_05_0187 - 23094816-23095466
Length = 216
Score = 26.6 bits (56), Expect = 6.9
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 145 SVNTERNQPNATKEGRIKCTLIPGDGVGPEL-VYSVQEVFKASSIP 279
SV ++P A K C L+ GDG G + V SV+EV S +P
Sbjct: 74 SVVRRFDRPQAYKHFIRSCRLLDGDGDGGAVAVGSVREVRVVSGLP 119
>06_03_0756 + 24244313-24244999
Length = 228
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 125 PMCCDPCTRARKTFRLISDILKICQIPLE 39
PMCC P T A K +SDI+ + LE
Sbjct: 100 PMCCSPTTAAGK----VSDIVDYLPVELE 124
>01_06_1514 -
37892552-37893074,37893291-37893367,37893471-37893587,
37893826-37893926,37895077-37895146,37895318-37895415,
37896326-37896419,37896792-37896882,37897222-37897547,
37898193-37898278,37899078-37899417
Length = 640
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 256 VFKASSIPVDFESFFFSEVNPTLSAPLEDVVNSIAKNK 369
V ++SSIP + + + PT+ + L VNS N+
Sbjct: 403 VSRSSSIPPNTRDALYQSLPPTVKSSLRSKVNSFVVNE 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,999,795
Number of Sequences: 37544
Number of extensions: 232726
Number of successful extensions: 501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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