Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O05
(396 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 208 1e-54
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.098
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.098
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.098
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.098
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.098
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.098
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 29 1.2
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 29 1.2
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 29 1.2
L13200-5|AAZ32789.1| 148|Caenorhabditis elegans Hypothetical pr... 27 3.7
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 27 3.7
AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical ... 27 3.7
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 26 8.5
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 26 8.5
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 26 8.5
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 208 bits (507), Expect = 1e-54
Identities = 95/130 (73%), Positives = 108/130 (83%)
Frame = +1
Query: 7 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 186
GISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRLD
Sbjct: 2 GISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLD 61
Query: 187 TGNFAWGSECSTRKTRIVDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPL 366
+GNF+W SE +TRKTRIVD +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL
Sbjct: 62 SGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPL 121
Query: 367 GRKKGAKLTE 396
RKK AKL+E
Sbjct: 122 ARKKNAKLSE 131
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.098
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 172 ALRLDTGNFAWGSECSTRKTRIVDVVYNASNNELV 276
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.098
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 172 ALRLDTGNFAWGSECSTRKTRIVDVVYNASNNELV 276
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.098
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 172 ALRLDTGNFAWGSECSTRKTRIVDVVYNASNNELV 276
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.098
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 172 ALRLDTGNFAWGSECSTRKTRIVDVVYNASNNELV 276
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.098
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 172 ALRLDTGNFAWGSECSTRKTRIVDVVYNASNNELV 276
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.098
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 172 ALRLDTGNFAWGSECSTRKTRIVDVVYNASNNELV 276
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 125 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLI 9
W S V +GRPN +++G P A+L C S++I
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQII 421
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 125 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLI 9
W S V +GRPN +++G P A+L C S++I
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQII 421
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 125 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLI 9
W S V +GRPN +++G P A+L C S++I
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQII 330
>L13200-5|AAZ32789.1| 148|Caenorhabditis elegans Hypothetical
protein ZK1236.5 protein.
Length = 148
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 4 RGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSR 150
R ++ HW++R G R PI ++K GRP + + R++++R R
Sbjct: 9 RNLNTRHWNRRIWEVGYRGPILPQQK-ATGRP--DYPVSANRVNILRER 54
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 214 CSTRKTRIVDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 336
CS + + ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical
protein C03H5.4 protein.
Length = 160
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 387 LGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTH 274
LG LP V I RC HHD + +Y G+G +
Sbjct: 8 LGFLLPETLNTFVLEIQFMTRCMTHHD-AWIYNGYGCY 44
>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 214 CSTRKTRIVDVVYNASNNELVRTKTLVKNAIVVVDATPF 330
C+ R + + S+N+LV K VKNAI +D F
Sbjct: 1671 CAPRPVLTMPIQRMPSSNDLVMKKLQVKNAISNLDLRSF 1709
>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 214 CSTRKTRIVDVVYNASNNELVRTKTLVKNAIVVVDATPF 330
C+ R + + S+N+LV K VKNAI +D F
Sbjct: 1671 CAPRPVLTMPIQRMPSSNDLVMKKLQVKNAISNLDLRSF 1709
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 85 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 216
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 85 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 216
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 137 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 48
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 137 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 48
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,164,424
Number of Sequences: 27780
Number of extensions: 218326
Number of successful extensions: 592
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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