Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O04
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 140 3e-34
03_04_0027 + 16593133-16593573 136 5e-33
02_01_0563 + 4134954-4135388 134 3e-32
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 31 0.38
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 30 0.67
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 30 0.88
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 26 1.9
09_04_0564 + 18565583-18566449,18569662-18570123 28 2.7
07_03_1617 - 28169177-28169400,28169508-28169763,28170308-281705... 27 4.7
12_01_0981 + 9931542-9931606,9931779-9933105 27 6.2
03_02_0827 + 11582974-11583027,11583210-11584358 27 6.2
01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879 27 8.2
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 23 9.2
>07_03_1250 - 25183375-25183815
Length = 146
Score = 140 bits (340), Expect = 3e-34
Identities = 62/122 (50%), Positives = 84/122 (68%)
Frame = +1
Query: 10 KHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQA 189
KHPGGRGNAGG HHHRI DKYHPGYFGK+GMR +H RNK + P +N+++LW++V +
Sbjct: 27 KHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLRNKFYSPAVNVERLWSMVPAEQ 86
Query: 190 RLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQPVIVKAKFFSKTAEQKIKAVGGVCVL 369
+ A A GK P++++ + P++P++VKAK SK AE+KIKA GG VL
Sbjct: 87 AAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKPIVVKAKLISKVAEKKIKAAGGAVVL 144
Query: 370 SA 375
+A
Sbjct: 145 TA 146
>03_04_0027 + 16593133-16593573
Length = 146
Score = 136 bits (330), Expect = 5e-33
Identities = 64/123 (52%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Frame = +1
Query: 10 KHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQA 189
KHPGGRGNAGG HHHRI DKYHPGYFGK+GMR +H N+ CP +N+++LW++V
Sbjct: 27 KHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLSNRFHCPAVNVERLWSMVPTD- 85
Query: 190 RLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ-PVIVKAKFFSKTAEQKIKAVGGVCV 366
K A A GK PVI++ + P Q P++VKAK SK AE+KIKA GG +
Sbjct: 86 --KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRPIVVKAKLISKVAEKKIKAAGGAVL 143
Query: 367 LSA 375
L+A
Sbjct: 144 LTA 146
>02_01_0563 + 4134954-4135388
Length = 144
Score = 134 bits (324), Expect = 3e-32
Identities = 62/123 (50%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Frame = +1
Query: 10 KHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQA 189
KHPGGRGNAGG HHHRI DKYHPGYFGK+GMR +H N+ CP +N+++LW++V +
Sbjct: 27 KHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCPAVNVERLWSMVPAE- 85
Query: 190 RLKYASATDGKVPVINIVK-AXXXXXXXXXXXPKQPVIVKAKFFSKTAEQKIKAVGGVCV 366
A A GK PVI++ + P++P++VKAK SK AE+KIKA GG +
Sbjct: 86 ----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERPIVVKAKLISKVAEKKIKAAGGAVL 141
Query: 367 LSA 375
L+A
Sbjct: 142 LTA 144
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 31.1 bits (67), Expect = 0.38
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 4 RGKHPGGRGNAGGEHHHRINMDKYH 78
+G+ GGRG G H+H N YH
Sbjct: 391 KGRGRGGRGRGRGYHYHNNNQQSYH 415
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 30.3 bits (65), Expect = 0.67
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 16 PGGRGNAGGEHHHRINMDKYH 78
P +G GG HHH+ NM K H
Sbjct: 306 PVEKGTMGGGHHHKQNMQKQH 326
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 29.9 bits (64), Expect = 0.88
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = +1
Query: 4 RGKHPGGRGNAGGEHHH---RINMDKYHPGYFGKLGMRNYH 117
RG+ GGRG G H H N YH G N+H
Sbjct: 369 RGRGRGGRGRGRGYHQHNNNHFNNQNYHNGQHHNHHANNHH 409
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 25.8 bits (54), Expect(2) = 1.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 52 DGAHHQHYHVHQ 17
D HH H+HVHQ
Sbjct: 42 DVGHHHHHHVHQ 53
Score = 21.4 bits (43), Expect(2) = 1.9
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = -1
Query: 43 HHQHYHVHQDAY 8
HH H H HQ +
Sbjct: 47 HHHHVHQHQQQH 58
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 28.3 bits (60), Expect = 2.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 7 GKHPGGRGNAGGEHHHRI 60
G PGG G GG+ HH++
Sbjct: 116 GSTPGGGGGGGGDRHHQL 133
>07_03_1617 -
28169177-28169400,28169508-28169763,28170308-28170556,
28170680-28170810,28170902-28171157
Length = 371
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 40 GEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTL 174
G+ + D YHP L M Y + + + +NL KL++L
Sbjct: 327 GDRKSHVFWDPYHPSEAANLVMAKYIVDGDSKYISPMNLRKLFSL 371
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 27.1 bits (57), Expect = 6.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 46 HHHRINMDKYHPGYFGKLGMRNYHMR-RNKDFCPVLNLDKL--WTLVSEQARLKYASATD 216
HHH+ N + +HP Y + + R RN DF P D L W +E+ Y + +
Sbjct: 161 HHHQYNPEPHHPHYEHRPHYADPAKRSRNVDF-PTFEGDYLESWIRKAEKYFSLYQTPEE 219
Query: 217 GKV 225
KV
Sbjct: 220 DKV 222
>03_02_0827 + 11582974-11583027,11583210-11584358
Length = 400
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 7 GKHPGGRGNAGGEHHH 54
GKH GG G G + HH
Sbjct: 144 GKHGGGGGGCGAQQHH 159
>01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879
Length = 379
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 19 GGRGNAGGEHHHRINMDKYH 78
GG G GG HHH + M H
Sbjct: 272 GGVGIVGGHHHHHLFMPGVH 291
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 23.4 bits (48), Expect(2) = 9.2
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1
Query: 43 HHQHYHVHQDA 11
HH H+H H+D+
Sbjct: 356 HHHHHHGHEDS 366
Score = 21.4 bits (43), Expect(2) = 9.2
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 49 GAHHQHYHVH 20
G HH H+H H
Sbjct: 352 GHHHHHHHHH 361
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,937,790
Number of Sequences: 37544
Number of extensions: 186090
Number of successful extensions: 686
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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