Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O04
         (424 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...   184   1e-46
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...   184   1e-46
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...   184   1e-46
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...   184   1e-46
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...   175   5e-44
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...   136   2e-32
AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a ...    44   3e-04

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  184 bits (447), Expect = 1e-46
 Identities = 79/122 (64%), Positives = 95/122 (77%)
 Frame = +1

Query: 10  KHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQA 189
           KHPGGRGNAGG HHHRIN DKYHPGYFGK+GM++YH++RN+ FCP +NLDKLWTLVSEQ 
Sbjct: 27  KHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQT 86

Query: 190 RLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQPVIVKAKFFSKTAEQKIKAVGGVCVL 369
           R+  A    G  P+I++V++           PKQPVIVKAKFFS+ AE+KIK+VGG CVL
Sbjct: 87  RVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVL 146

Query: 370 SA 375
            A
Sbjct: 147 VA 148


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score =  184 bits (447), Expect = 1e-46
 Identities = 79/122 (64%), Positives = 95/122 (77%)
 Frame = +1

Query: 10  KHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQA 189
           KHPGGRGNAGG HHHRIN DKYHPGYFGK+GM++YH++RN+ FCP +NLDKLWTLVSEQ 
Sbjct: 26  KHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQT 85

Query: 190 RLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQPVIVKAKFFSKTAEQKIKAVGGVCVL 369
           R+  A    G  P+I++V++           PKQPVIVKAKFFS+ AE+KIK+VGG CVL
Sbjct: 86  RVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVL 145

Query: 370 SA 375
            A
Sbjct: 146 VA 147


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  184 bits (447), Expect = 1e-46
 Identities = 79/122 (64%), Positives = 95/122 (77%)
 Frame = +1

Query: 10  KHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQA 189
           KHPGGRGNAGG HHHRIN DKYHPGYFGK+GM++YH++RN+ FCP +NLDKLWTLVSEQ 
Sbjct: 27  KHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQT 86

Query: 190 RLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQPVIVKAKFFSKTAEQKIKAVGGVCVL 369
           R+  A    G  P+I++V++           PKQPVIVKAKFFS+ AE+KIK+VGG CVL
Sbjct: 87  RVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVL 146

Query: 370 SA 375
            A
Sbjct: 147 VA 148


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score =  184 bits (447), Expect = 1e-46
 Identities = 79/122 (64%), Positives = 95/122 (77%)
 Frame = +1

Query: 10  KHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQA 189
           KHPGGRGNAGG HHHRIN DKYHPGYFGK+GM++YH++RN+ FCP +NLDKLWTLVSEQ 
Sbjct: 27  KHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQT 86

Query: 190 RLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQPVIVKAKFFSKTAEQKIKAVGGVCVL 369
           R+  A    G  P+I++V++           PKQPVIVKAKFFS+ AE+KIK+VGG CVL
Sbjct: 87  RVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVL 146

Query: 370 SA 375
            A
Sbjct: 147 VA 148


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  175 bits (426), Expect = 5e-44
 Identities = 76/122 (62%), Positives = 93/122 (76%)
 Frame = +1

Query: 10  KHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQA 189
           KHPGGRGNAGG HHHRIN DKYHPGYFGK+GM++Y+++RN+ FCP +NLDKLWTLVSEQ 
Sbjct: 27  KHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYNLKRNQSFCPTVNLDKLWTLVSEQT 86

Query: 190 RLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQPVIVKAKFFSKTAEQKIKAVGGVCVL 369
           R+  A    G  P+I++V++            KQPVIVKAK FS+ AE+KIK+VGG CVL
Sbjct: 87  RVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQPVIVKAKLFSRRAEEKIKSVGGACVL 146

Query: 370 SA 375
            A
Sbjct: 147 VA 148


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score =  136 bits (330), Expect = 2e-32
 Identities = 54/80 (67%), Positives = 67/80 (83%)
 Frame = +1

Query: 10  KHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQA 189
           KHPGGRGNAGG HHHRIN DKYHPGYFGK+GM++YH++RN+ FCP +NLDKLWTLVSEQ 
Sbjct: 27  KHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQT 86

Query: 190 RLKYASATDGKVPVINIVKA 249
           R+  A    G  P+I++V++
Sbjct: 87  RVNAAKNKTGAAPIIDVVRS 106


>AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a
           protein.
          Length = 34

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +1

Query: 148 LNLDKLWTLVSEQARLKYASATDGKVPVINIVKA 249
           +NLDKLWTLVSEQ R+  A    G  P+I++V++
Sbjct: 1   VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,943,694
Number of Sequences: 237096
Number of extensions: 1023551
Number of successful extensions: 2533
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2514
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)