Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O04
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    20   10.0 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           20   10.0 

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 353 VEYVSCRRNLRKIQNLTKKKTK 418
           V YVS    +  +QNL KK+T+
Sbjct: 226 VRYVSQWEEVYILQNLQKKRTR 247


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 158 TNCGLWSLSRQ 190
           T+C LW++ RQ
Sbjct: 184 TDCQLWAIDRQ 194


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -1

Query: 43 HHQHYHV 23
          H+QHYH+
Sbjct: 7  HYQHYHI 13


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 194 SLACSETRVHSLSRF 150
           SL C++TR++ L+ F
Sbjct: 65  SLVCADTRLNKLAVF 79


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/33 (27%), Positives = 12/33 (36%)
 Frame = -1

Query: 160 CQDLKQGRNPCFFSCGNFSYQVCQSTQGGTCPC 62
           C D   G + C   C    Y+  + T    C C
Sbjct: 103 CNDTSIGVDGCDLMCCGRGYKTQEVTVVERCAC 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,371
Number of Sequences: 438
Number of extensions: 1843
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)