Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O02
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    33   0.008
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   0.42 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   1.3  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    24   5.2  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    23   6.9  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    23   6.9  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    23   6.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    23   6.9  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    23   9.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   9.1  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    23   9.1  

>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 33.1 bits (72), Expect = 0.008
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 83  VCILSGGNIDTTILGRCLERGLAAEQRLVKFKVTVSDRPGGIADLCKLI 229
           VCILSG N+D   L    ER      + V   VT+ +RPG    L  +I
Sbjct: 397 VCILSGANMDFDRLRFIAERADLGLNKEVFLSVTIPERPGSFEALHNII 445


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 0.42
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 203 GIADLCKLIASLGCLDKRYHS 265
           GIAD+ KL+   GCL+ RY S
Sbjct: 119 GIADISKLLKIRGCLNGRYLS 139


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 243 HPSDAMSLQRSAIPPGRSLTVTLNFTKRCSAARPRSRHRP 124
           H SDA+SL+  AI    +     N  +  +   PR R RP
Sbjct: 392 HDSDALSLKHFAITSPNNQQFLNNQQRESAPLLPRKRGRP 431


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 155 EQRLVKFKVTVSDRPGGIADLCKLIASL 238
           + RLV+  + + D    IADL ++ ASL
Sbjct: 370 DPRLVRLSIGIEDAADLIADLNRVFASL 397


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 134 LERGLAAEQRLVKFKVTVSDRPGGIADLCKLIASLG 241
           LE GLA        K T SD+P G+     ++ S G
Sbjct: 169 LESGLATPVVETLKKATTSDKPAGVKKKIAVMTSGG 204


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -1

Query: 252 LSRHPSDAMSLQRSAIPPGR-SLTVTL-NFTKRCSAARPRSRHRPNIVVSMFPPDSIHTT 79
           ++ HPS +M         G  SL   L ++ +   +++ R R  P IVV+ FP +     
Sbjct: 178 VNSHPSQSMFGNGVRASSGSYSLKRDLKDYEEELPSSKKRQRTPPPIVVTNFPQE----- 232

Query: 78  CFPAXKFRVLRPKPIMAAYA 19
            FP+ K  +   + I   Y+
Sbjct: 233 IFPSKKISLSAKRRIQGKYS 252


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 217 KVSDTARTIANGHFELYQTLFSCQT 143
           +V +    I  GH+   +TLF C +
Sbjct: 161 EVQELIPQIGTGHYRAIETLFGCHS 185


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 22/93 (23%), Positives = 32/93 (34%)
 Frame = -1

Query: 282  GPRRVPE*YLLSRHPSDAMSLQRSAIPPGRSLTVTLNFTKRCSAARPRSRHRPNIVVSMF 103
            GPR V +    +  P    + +    P    ++       R  A  P  + RPN   +  
Sbjct: 985  GPRPVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPA--PAMQARPNTTQAAA 1042

Query: 102  PPDSIHTTCFPAXKFRVLRPKPIMAAYAHSAAS 4
            P  S  TT   A      +P P     A S+ S
Sbjct: 1043 PVTSTTTTIKQATTVSASKPAPSTVTSAASSPS 1075


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -2

Query: 167 PNAVQLP--DLAPDIDLI*SYRCSLQIVYIPP 78
           PN    P  ++ P I    S  C L  +Y+PP
Sbjct: 123 PNYTMFPMLNVVPSITFFCSLVCLLAEIYVPP 154


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 240 PSDAMSLQRSAIPPGRSLTVTLNFTKRCSAARPRSRHRPNI 118
           PS    +     PP  S     N + R S+  P + H PN+
Sbjct: 191 PSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNV 231


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 253 FIETPERRYEFTKVSDTARTIANGHFELYQ 164
           F+   +R+    ++    + + N HF+LYQ
Sbjct: 253 FLTEEDRKLVVKRLRANKQGVGNNHFKLYQ 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,170,764
Number of Sequences: 5004
Number of extensions: 20446
Number of successful extensions: 52
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)