Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_O02
(291 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1383 + 26594304-26594386,26595927-26595972,26596108-265962... 31 0.16
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 31 0.21
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 30 0.36
03_05_1006 + 29635372-29635442,29635544-29635589,29635672-296358... 29 0.83
04_03_0749 + 19280265-19280511,19280584-19280651,19280737-19281834 28 1.1
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 27 1.9
01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48... 27 2.5
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436... 27 3.3
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 26 4.4
01_06_0173 - 27221738-27221883,27222009-27222197,27222424-272225... 26 4.4
01_01_0661 - 5036592-5037428,5037529-5037957,5038067-5038261,503... 26 4.4
05_07_0139 - 27968816-27968890,27969065-27969456,27969558-279696... 26 5.8
10_08_0810 + 20734490-20734606,20735182-20735433,20735521-207356... 25 7.7
>08_02_1383 +
26594304-26594386,26595927-26595972,26596108-26596222,
26596645-26596712,26596814-26597440,26597527-26597631,
26597715-26598062
Length = 463
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 143 GLAAEQRLVKFKVTVSDRPGGIADLCKLIASLGC 244
G A + ++T +DRPG ++++C ++ASL C
Sbjct: 122 GAAPSEETTCIELTGTDRPGLLSEVCAVLASLRC 155
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = -1
Query: 255 LLSRHPSDAMSLQRSAIPPGRSLTVTLNFTKRCSAARPRSRHRPNIVVSMFPPDSIHTTC 76
LL +D I G S T +++ +C+ R+R V P S HT C
Sbjct: 366 LLEPEDTDGACKLEEMIADGMSFTCPVHWCFKCAKMEDRTRSEFQFAVCRRCPRSYHTEC 425
Query: 75 FPA 67
P+
Sbjct: 426 LPS 428
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 107 IDTTILGRCLERGLAAEQRLVKFKVTVSDRPGGIADLC 220
+D + LG C RG + LV+F +T S GG D C
Sbjct: 165 LDASHLGDCPWRGNSCADSLVQFHLTPSALVGGFKDRC 202
>03_05_1006 +
29635372-29635442,29635544-29635589,29635672-29635813,
29635878-29636653,29636750-29637370
Length = 551
Score = 28.7 bits (61), Expect = 0.83
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +2
Query: 80 VVCILSGGNID----TTILGRCLERGLAAEQRLVKFKVTVSDRPGGIADLCKLIASLGC 244
V C GGN TT LG + G + TV DRPG ++ + +++A GC
Sbjct: 112 VPCQRPGGNGPSPRFTTCLGNVVGPGGPDVSDCAALEFTVHDRPGLLSSITQVLADNGC 170
>04_03_0749 + 19280265-19280511,19280584-19280651,19280737-19281834
Length = 470
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 143 GLAAEQRLVKFKVTVSDRPGGIADLCKLIASLGC 244
G+ + ++T +DRPG ++++C ++A + C
Sbjct: 122 GIVPAEEYTVIELTGTDRPGLLSEVCAVLAGMRC 155
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 210 AIPPGRSLTVTLNFTKRCSAARPRSR 133
A+PP RSL V N +R PR R
Sbjct: 27 AVPPSRSLQVWSNLARRGELTHPRHR 52
>01_01_0061 +
483116-483757,483891-484046,484171-484262,484410-485076
Length = 518
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -1
Query: 195 RSLTVTLNFTKRCSAARPRSRHRPNIVVSMFPPDSIHTTCFPAXKFRVLRPKP 37
+S +V T+ S R+ P I S FP + I +C+ A + R P
Sbjct: 182 KSSSVLPRITRSKSFVADRAPDHPKIPKSPFPAEKISMSCYTASRAMSRRAPP 234
>01_06_1153 -
34942608-34942975,34943082-34943330,34943516-34943625,
34944698-34944771,34945237-34945306,34945848-34945947,
34946045-34946120,34946572-34946646,34947067-34947156,
34947238-34947354,34947457-34947567,34947649-34947788,
34947962-34948043,34948224-34948303,34948938-34949046,
34949295-34949417,34949972-34950044,34950338-34950489,
34951029-34951127,34952258-34952383
Length = 807
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = -1
Query: 216 RSAIPPGRS-----LTVTLNFTKRCSAARPRSRHRPNIVVSMFPPDS-IHTTCFPA 67
R PP R+ L+VT ++ + A +R PN+VV F PDS + T F A
Sbjct: 475 RDTFPPARAAGIMALSVTSSYYEMTEIA---TRILPNVVVLTFDPDSDVRTKAFQA 527
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 102 PPDSIHTTCFPAXKFR-VLRPKPIMAAYAHSAASC 1
PP ++ TTC A + P + AA+ H+AA C
Sbjct: 20 PPVAVPTTCGCAACLQGCFVPVGVQAAFPHAAAGC 54
>01_06_0173 -
27221738-27221883,27222009-27222197,27222424-27222517,
27222647-27222756,27222849-27222936,27223046-27223279
Length = 286
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 176 KVTVSDRPGGIADLCKLIASL 238
K+TV DR G +A LC ++A L
Sbjct: 191 KITVFDRRGHVAKLCVVLAPL 211
>01_01_0661 -
5036592-5037428,5037529-5037957,5038067-5038261,
5038919-5038942,5039436-5039780
Length = 609
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 92 LSGGNIDTTILGRCLERGLAA 154
+SGG + ILGRC RG+ A
Sbjct: 47 VSGGALSQMILGRCWGRGVTA 67
>05_07_0139 -
27968816-27968890,27969065-27969456,27969558-27969640,
27969841-27969933,27970012-27970223,27970604-27970753,
27971195-27971254,27971369-27971496,27972008-27972416,
27973514-27973570
Length = 552
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 231 AMSLQRSAIPPGRSLTVTLNFTKRCSAARP 142
A ++ ++IPP L T T+R ARP
Sbjct: 371 ATTVHSTSIPPNEGLDATSQVTQRIPTARP 400
>10_08_0810 +
20734490-20734606,20735182-20735433,20735521-20735664,
20735774-20736493,20736955-20737177,20737463-20737523,
20738294-20738615
Length = 612
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 22 VRGHYRLGS*HSELXRGKTGGMYTIWREHRYDYIRSMSG 138
V+G +G H + G G IWR+ ++R+M G
Sbjct: 329 VKGVTFIGPNHEYVASGSDCGRLFIWRKKDGKFLRAMEG 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,365,971
Number of Sequences: 37544
Number of extensions: 159913
Number of successful extensions: 348
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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