Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O02
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical pr...    84   2e-17
AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical ...    72   8e-14
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr...    27   1.7  
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr...    27   1.7  
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr...    27   1.7  
AC006603-3|AAF39750.1|  204|Caenorhabditis elegans Hypothetical ...    27   2.2  
Z77669-3|CAB01241.2|  259|Caenorhabditis elegans Hypothetical pr...    26   5.2  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    25   6.8  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    25   6.8  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    25   6.8  
Z81133-6|CAJ85766.1|  398|Caenorhabditis elegans Hypothetical pr...    25   9.1  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    25   9.1  

>Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical
           protein K01C8.1 protein.
          Length = 499

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 40/57 (70%), Positives = 47/57 (82%)
 Frame = +2

Query: 71  GKQVVCILSGGNIDTTILGRCLERGLAAEQRLVKFKVTVSDRPGGIADLCKLIASLG 241
           GK+VV ILSGGNIDTT+LGR +ERGLA + RLV+ +V VSDRPGGIA+L   IA LG
Sbjct: 392 GKKVVSILSGGNIDTTVLGRSIERGLAVDGRLVRLEVVVSDRPGGIAELTTTIAHLG 448



 Score = 28.7 bits (61), Expect = 0.73
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 240 GVSIKDIIQERAWVQGD 290
           G SIKDI  ERAW+  D
Sbjct: 448 GASIKDIFHERAWISTD 464


>AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.9 protein.
          Length = 448

 Score = 71.7 bits (168), Expect = 8e-14
 Identities = 31/56 (55%), Positives = 42/56 (75%)
 Frame = +2

Query: 71  GKQVVCILSGGNIDTTILGRCLERGLAAEQRLVKFKVTVSDRPGGIADLCKLIASL 238
           GK VV ILSGGNID+T LGRC+ERGLA + R+++  V + D+PGG++ L  L+  L
Sbjct: 332 GKTVVSILSGGNIDSTSLGRCIERGLAYDHRVIRLSVIIPDKPGGLSKLTGLVGEL 387


>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical
           protein ZK337.1c protein.
          Length = 1516

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 210 AIPPGRSLTVTLNFTKRCSAARPRSRHRPNIVVS-MFPPDSIHTT-CFPAXKFRVLRPKP 37
           A+  G+SL+ +L  T+  S    +   R NIVVS     +S H T  FPA     + PK 
Sbjct: 504 AVDVGKSLSFSLKATQPLSTITYQVMSRSNIVVSQQMTVNSEHATISFPAT--ANMAPKS 561

Query: 36  IMAAYA 19
            +  YA
Sbjct: 562 RLIVYA 567


>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical
           protein ZK337.1b protein.
          Length = 1501

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 210 AIPPGRSLTVTLNFTKRCSAARPRSRHRPNIVVS-MFPPDSIHTT-CFPAXKFRVLRPKP 37
           A+  G+SL+ +L  T+  S    +   R NIVVS     +S H T  FPA     + PK 
Sbjct: 504 AVDVGKSLSFSLKATQPLSTITYQVMSRSNIVVSQQMTVNSEHATISFPAT--ANMAPKS 561

Query: 36  IMAAYA 19
            +  YA
Sbjct: 562 RLIVYA 567


>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical
           protein ZK337.1a protein.
          Length = 1508

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 210 AIPPGRSLTVTLNFTKRCSAARPRSRHRPNIVVS-MFPPDSIHTT-CFPAXKFRVLRPKP 37
           A+  G+SL+ +L  T+  S    +   R NIVVS     +S H T  FPA     + PK 
Sbjct: 504 AVDVGKSLSFSLKATQPLSTITYQVMSRSNIVVSQQMTVNSEHATISFPAT--ANMAPKS 561

Query: 36  IMAAYA 19
            +  YA
Sbjct: 562 RLIVYA 567


>AC006603-3|AAF39750.1|  204|Caenorhabditis elegans Hypothetical
           protein B0524.5 protein.
          Length = 204

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 279 PRRVPE*YLLSRHPSDAMSLQRSAIPPGRSLTVTLNFTKRCSAARPRSRHR 127
           PR+  E +L    P    + + S IPP   + +  N  +R    RPR+ +R
Sbjct: 52  PRKKKEIFLEEHTPPSTDTDEVSTIPPAEQIRIVENHRRRI-GVRPRAGNR 101


>Z77669-3|CAB01241.2|  259|Caenorhabditis elegans Hypothetical
           protein T07F10.4a protein.
          Length = 259

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 247 ETPERRYEFTKVSDTARTIANGHFELYQTLFSC 149
           E P++   FT ++D  R     HF    TLF C
Sbjct: 37  EIPKQFDNFTVLADKFRAYKEDHFGYITTLFIC 69


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
            protein T04H1.4b protein.
          Length = 1312

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 155  EQRLVKFKVTVSDRPGGIADLCKLIASLGCLDKRYHSGT 271
            ++RLV  ++T+S RP  I  L K    +  L KRY  GT
Sbjct: 1265 DERLVN-RITISCRPEYIYCLGKDEHGISFLSKRYPDGT 1302


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
            T04H1.4a protein.
          Length = 1298

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 155  EQRLVKFKVTVSDRPGGIADLCKLIASLGCLDKRYHSGT 271
            ++RLV  ++T+S RP  I  L K    +  L KRY  GT
Sbjct: 1251 DERLVN-RITISCRPEYIYCLGKDEHGISFLSKRYPDGT 1288


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
            ceRAD50 protein.
          Length = 1298

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 155  EQRLVKFKVTVSDRPGGIADLCKLIASLGCLDKRYHSGT 271
            ++RLV  ++T+S RP  I  L K    +  L KRY  GT
Sbjct: 1251 DERLVN-RITISCRPEYIYCLGKDEHGISFLSKRYPDGT 1288


>Z81133-6|CAJ85766.1|  398|Caenorhabditis elegans Hypothetical
           protein T28B8.3b protein.
          Length = 398

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 196 TIANGHFELYQTLFSCQTSLQTST*YSRIDVPSR 95
           T+AN  F+L    +SC  + + S+  + I++PSR
Sbjct: 29  TLAN-EFQLALVFYSCSEAREASSNATLINIPSR 61


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
            T28B8.3a protein.
          Length = 1838

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 196  TIANGHFELYQTLFSCQTSLQTST*YSRIDVPSR 95
            T+AN  F+L    +SC  + + S+  + I++PSR
Sbjct: 1469 TLAN-EFQLALVFYSCSEAREASSNATLINIPSR 1501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,592,834
Number of Sequences: 27780
Number of extensions: 119133
Number of successful extensions: 253
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)