Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_O01
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    29   0.19 
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.19 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   1.3  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   3.1  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    25   4.1  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   4.1  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   5.4  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   5.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    24   7.1  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    24   7.1  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    24   9.4  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 237 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHPI 350
           D+  A +   + AHK  L+  S YF+  F K+ P++H I
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI 206


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -2

Query: 294 LIKLIYVPVTICLRQPMLRLLNLHTTAGHESLLTYSRGNCSNIMRIV 154
           L+ L Y     C+    LR L  H T GH  LL +S     N + IV
Sbjct: 16  LVILFYAKNRFCISIDHLRPLKSHRTHGHYCLLNFSLRENKNYLIIV 62


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 222 CGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFK 326
           C + +D  +  +   L+AH L LS+ S YF   F+
Sbjct: 754 CEETMDTVIKLKDGELKAHGLFLSLRSEYFSSYFQ 788


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 348 LDAELGSF*TFLENKVNILIKLIYVPVTIC 259
           +D +LG    F+ ++ NI+I + Y+P  +C
Sbjct: 87  MDKDLG----FVGDQYNIMISIFYIPFVLC 112


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 252 QPMLRLLNLHTTAGHESLLTYSRGNCSNIMRIVRPTP*WRRLWEPYPKLCTL 97
           QP+L +L   ++A   S+L  +    SN+ R   P P W  +    P L  L
Sbjct: 207 QPLLNILQ--SSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKL 256


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +3

Query: 162 SLCWNNFHANMSAGFHGLLSCGDLVDVTLAAEGRLLQAHKLV 287
           +L +NN H+N+ +G H  L+  +L + +   E  ++Q ++ +
Sbjct: 363 NLDYNNCHSNVWSGEHS-LTLSNLAEKSNLKEAEIIQGNRTI 403


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 261 RLLQAHKLVLSVCSPYFQEMFKMNPTQHPIV 353
           R+ ++ K + +VCS  +Q +   +PT  P V
Sbjct: 156 RIAESGKCLCTVCSCLYQGIISHSPTFRPFV 186


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -2

Query: 342 AELGSF*T-FLENKVNILIK-LIYVPVTICLRQPMLRLLNLHTTAGHESLLTYSRGNCSN 169
           AEL S  T F    ++ ++K LI++P+    +    RLLNL     HE LL+  + N ++
Sbjct: 734 AELCSSLTRFTPKNIDFVLKSLIHIPIHSITKNQRTRLLNLLII--HEKLLS-DKDNSAH 790

Query: 168 I 166
           I
Sbjct: 791 I 791


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 315 LENKVNILIKLIYVPVTICLRQPMLRLLNLHTTAGHESLLTY 190
           LEN+   ++K IYVP    L+     +  +    GH  ++ Y
Sbjct: 76  LENEKPFVLKRIYVPDKTALQLVHGEIETMKRLKGHRHIVNY 117


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 237 LLNLHTTAGHESLLTYSRGNCSNIMRIVRPTP*WRRLWEPYPKLCTL 97
           LLN+  +    S+L  S    SN+ R   P P W  + +  P L  L
Sbjct: 210 LLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKL 256


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 79  FLILEL*STKLRIGFPQSPPSW-RRTNNSHYVGTI 180
           + ILE+   KL+  F Q PP W     NSH V  +
Sbjct: 417 YAILEV---KLQTQFGQDPPEWVNNLVNSHLVEAV 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,867
Number of Sequences: 5004
Number of extensions: 34100
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)