Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N22
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 234 3e-62
AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical ... 29 2.6
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical pr... 28 4.5
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 28 4.5
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 28 4.5
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 28 4.5
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 5.9
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 5.9
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 7.9
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 27 7.9
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 27 7.9
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 27 7.9
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 27 7.9
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 234 bits (573), Expect = 3e-62
Identities = 109/186 (58%), Positives = 145/186 (77%), Gaps = 1/186 (0%)
Frame = +2
Query: 47 KILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 226
K+LK+ E +SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P
Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66
Query: 227 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVY 403
+LKAF KI LVRELEKKF G+ ++ + R+ILPKP ++ KQKRPRSRTLT+V+
Sbjct: 67 QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126
Query: 404 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVT 583
DA L++LV+PAE+VG+RIRVKLDG ++ KVHLDK+ QT + HK+ F SVY+KLTG++VT
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVT 186
Query: 584 FEFPEP 601
FEFP+P
Sbjct: 187 FEFPDP 192
>AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical
protein Y77E11A.9 protein.
Length = 296
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 431 GIPDLPIWRHIQKSVSWNGAFSVCWLHVSCGWAW 330
GIP+ + S++W+G + C+ +C AW
Sbjct: 5 GIPNTTNNTQVNTSLTWDGCLTACFYSPACVMAW 38
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 374 AFSVCWLHVSCGWAWAGSYGH 312
A SV W+ +SC + WAG G+
Sbjct: 572 ALSVLWIILSCHYGWAGPIGN 592
>Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 28.3 bits (60), Expect = 4.5
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 13/193 (6%)
Frame = +2
Query: 65 AIEPDTFETSISQALVELETNSDLKA-QLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 241
A + TFE+ +Q L EL+ A QL+ + + K KE+E H + P K
Sbjct: 394 AAKQSTFESEKTQLLKELDEVKKAHANQLKSIALIK-KELEDHKAAA-----PSVKPTLS 447
Query: 242 QKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR---PRSRTLTSVYDAI 412
+ Q+ +++ +K +V + + K K R + K R R +T A
Sbjct: 448 ESEQVDALQQKFEKAEAANVSINEELRSASKELGKIRFQMQGKESDLSRERKMTEALSAQ 507
Query: 413 LEDLVFPA---------EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKL 565
L+ +V + E+ + V+L +++ K+H DK + ++ + Y+
Sbjct: 508 LQSVVSSSQEEALKKEEELKKLKATVELQQAEIEKMHEDKKEADQKFKNLEKEYAAYRDE 567
Query: 566 TGREVTFEFPEPY 604
E+ E Y
Sbjct: 568 QRPEIKTELERRY 580
>Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical
protein C14H10.2b protein.
Length = 412
Score = 28.3 bits (60), Expect = 4.5
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 13/193 (6%)
Frame = +2
Query: 65 AIEPDTFETSISQALVELETNSDLKA-QLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 241
A + TFE+ +Q L EL+ A QL+ + + K KE+E H + P K
Sbjct: 60 AAKQSTFESEKTQLLKELDEVKKAHANQLKSIALIK-KELEDHKAAA-----PSVKPTLS 113
Query: 242 QKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR---PRSRTLTSVYDAI 412
+ Q+ +++ +K +V + + K K R + K R R +T A
Sbjct: 114 ESEQVDALQQKFEKAEAANVSINEELRSASKELGKIRFQMQGKESDLSRERKMTEALSAQ 173
Query: 413 LEDLVFPA---------EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKL 565
L+ +V + E+ + V+L +++ K+H DK + ++ + Y+
Sbjct: 174 LQSVVSSSQEEALKKEEELKKLKATVELQQAEIEKMHEDKKEADQKFKNLEKEYAAYRDE 233
Query: 566 TGREVTFEFPEPY 604
E+ E Y
Sbjct: 234 QRPEIKTELERRY 246
>Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 28.3 bits (60), Expect = 4.5
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 13/193 (6%)
Frame = +2
Query: 65 AIEPDTFETSISQALVELETNSDLKA-QLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 241
A + TFE+ +Q L EL+ A QL+ + + K KE+E H + P K
Sbjct: 394 AAKQSTFESEKTQLLKELDEVKKAHANQLKSIALIK-KELEDHKAAA-----PSVKPTLS 447
Query: 242 QKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR---PRSRTLTSVYDAI 412
+ Q+ +++ +K +V + + K K R + K R R +T A
Sbjct: 448 ESEQVDALQQKFEKAEAANVSINEELRSASKELGKIRFQMQGKESDLSRERKMTEALSAQ 507
Query: 413 LEDLVFPA---------EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKL 565
L+ +V + E+ + V+L +++ K+H DK + ++ + Y+
Sbjct: 508 LQSVVSSSQEEALKKEEELKKLKATVELQQAEIEKMHEDKKEADQKFKNLEKEYAAYRDE 567
Query: 566 TGREVTFEFPEPY 604
E+ E Y
Sbjct: 568 QRPEIKTELERRY 580
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 445 WQTHQSEARWLTTHQSASRQKPTDNY 522
W+ H+SE WLT Q ++ T NY
Sbjct: 171 WRFHKSEQVWLTRSQYGGVKEQTGNY 196
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 445 WQTHQSEARWLTTHQSASRQKPTDNY 522
W+ H+SE WLT Q ++ T NY
Sbjct: 221 WRFHKSEQVWLTRSQYGGVKEQTGNY 246
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 445 WQTHQSEARWLTTHQSASRQKPTDNY 522
W+ H+SE WLT Q ++ T NY
Sbjct: 298 WRFHKSEQVWLTRSQYGGVKEQTGNY 323
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 461 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 592
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 461 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 592
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435
>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical
protein C16A3.3 protein.
Length = 1743
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +2
Query: 23 GRVFKMSTKILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 202
G+++K S KAG TF T + V + L + L + I K + + NK+
Sbjct: 615 GKIYKGSL-CAKAGEKANVTF-TGEGKKEVYASVDDHLLSDLLDAPIGLTKRLLIENKED 672
Query: 203 IIIYVPMPKLKAFQKIQIR 259
I VPM K+ A + ++
Sbjct: 673 ISTIVPMGKMAAINRACVK 691
>Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical
protein F27E5.1 protein.
Length = 401
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 74 PDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY--VPMPKLKAFQK 247
PD ++ + S+ ++ + N DL + R I KA + E+H ++ Y +P + A++
Sbjct: 39 PDIYDPAQSEKVLWFDVNLDLPPRQRFQQIAKAYKKEIHAVFDVLNYFLTIIPGVNAWEL 98
Query: 248 IQIRLVRELEK 280
I L+K
Sbjct: 99 IGNMTASALDK 109
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +2
Query: 53 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 232
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 233 KAFQKIQIRLVRELEKKFSGKHVVFV 310
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +2
Query: 53 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 232
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 233 KAFQKIQIRLVRELEKKFSGKHVVFV 310
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +2
Query: 53 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 232
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 233 KAFQKIQIRLVRELEKKFSGKHVVFV 310
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -3
Query: 437 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 342
RP I D P+W ++ +++++ S+C +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -3
Query: 437 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 342
RP I D P+W ++ +++++ S+C +C
Sbjct: 842 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 873
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -3
Query: 437 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 342
RP I D P+W ++ +++++ S+C +C
Sbjct: 814 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 845
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -3
Query: 437 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 342
RP I D P+W ++ +++++ S+C +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,229
Number of Sequences: 27780
Number of extensions: 319768
Number of successful extensions: 922
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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