Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N21
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.24 
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   0.96 
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    27   1.7  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   5.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   9.0  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 31  STTGAMARSYSMCLSPAVSCCPVGRCRWTGNPPRPILAFSPPTKTWTQCATLN 189
           ++T +   S S  LS + SC        TGN   P+    PPT + T   T N
Sbjct: 374 ASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTN 426



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 31  STTGAMARSYSMCLSPAVSCCPVGRCRWTGNPPRPILAFSPPTKT 165
           ++T +   S S   S + SC        TGN   P+    PPT T
Sbjct: 320 ASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 364


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 211 RISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPAISTSN 59
           + S     + L  V  S+L +  +VL L   P     P G R  PA++TSN
Sbjct: 69  KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 200 HEYLFKVAHCVHVFVGGENAS 138
           H  LF V+H V  FV GENA+
Sbjct: 65  HSGLFDVSHMVQWFVRGENAT 85


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 217 YRRISFTNTCSKLRIVSMSSLAEKMQVLVLGD 122
           Y+R    N C +L + S+S L +K Q  +L D
Sbjct: 119 YQRTRVENVCKRLGLKSLSFLWQKDQEKLLND 150


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -3

Query: 205 SFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPAISTSNMTSP*RR*SSF 26
           S +++ S     S SS A    +      PS  +    S    AIS+S+ +SP    S  
Sbjct: 13  SLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFT 72

Query: 25  EPAESSLV 2
            PA SS +
Sbjct: 73  SPASSSFI 80


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 159 EDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGF 281
           +D   +   E  F +  + Y+Y  +M +EE+ K+    + F
Sbjct: 175 KDEKKLYEAETAFEQSSQEYEYYNEMLKEELPKLFALAQSF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,561
Number of Sequences: 5004
Number of extensions: 36169
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)