Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N21
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    30   0.86 
AC084197-42|AAU87806.2|  544|Caenorhabditis elegans Acetylcholin...    30   0.86 
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein...    28   4.6  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z99276-2|CAB16482.1|  388|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AL023843-2|CAA19523.1|  388|Caenorhabditis elegans Hypothetical ...    27   6.1  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   8.0  
AL032648-6|CAC35867.1|  244|Caenorhabditis elegans Hypothetical ...    27   8.0  
AF303259-1|AAG50217.1|  244|Caenorhabditis elegans 2O16 protein.       27   8.0  

>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 8   ARFGWLETRLPALWR-GHIRCAYRRRSPAARWVGVDG 115
           AR G LE  LP  W+ G IR   R+ S  A W   DG
Sbjct: 125 ARLG-LEKMLPTGWKYGTIRVGLRKNSQGAPWYNTDG 160


>AC084197-42|AAU87806.2|  544|Caenorhabditis elegans Acetylcholine
           receptor protein 25 protein.
          Length = 544

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +2

Query: 38  PALWRGHIRCAYRRRSPAARWVGVD---GRGIPQDQYLHFL-RQRRHGHNAQL*TGIRET 205
           P  WR     +   +SPA  W       G  +P +Q    L  Q+ HGH +++   IRE 
Sbjct: 438 PPAWRSTTTTSQPPQSPAHLWWNATNRMGNRVPVEQIAQLLVLQQVHGHLSEINKHIRER 497

Query: 206 DASVQI 223
           + S +I
Sbjct: 498 EKSKKI 503


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -3

Query: 208 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 74
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 618 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 662


>Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical
           protein C33G3.1a protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -3

Query: 208 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 74
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 524 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 568


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -3

Query: 208 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 74
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 618 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 662


>AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein
           protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -3

Query: 208 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 74
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 524 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 568


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 118 PSIDTDPPGSRRPPAISTSNMTSP*RR*SSFEP 20
           P+I T PP ++ PP   TS+ T   R   ++ P
Sbjct: 369 PTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAP 401


>Z99276-2|CAB16482.1|  388|Caenorhabditis elegans Hypothetical
           protein Y52D3.1a protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/60 (21%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +3

Query: 162 DMDTMRNFEQVFVKLMRR-YKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARM-TALWIGN 335
           DM ++++ +++ + +  R  ++L + F +EM + +     ++PQQR   + + ++ W+G+
Sbjct: 278 DMISLKDDQKMGLDISHRPQEHLTRRFSKEMHEFIANCLDYDPQQRGSASDLKSSAWLGS 337


>AL023843-2|CAA19523.1|  388|Caenorhabditis elegans Hypothetical
           protein Y52D3.1a protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/60 (21%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +3

Query: 162 DMDTMRNFEQVFVKLMRR-YKYLEKMFEEEMKKVLVYLKGFEPQQRIKLARM-TALWIGN 335
           DM ++++ +++ + +  R  ++L + F +EM + +     ++PQQR   + + ++ W+G+
Sbjct: 278 DMISLKDDQKMGLDISHRPQEHLTRRFSKEMHEFIANCLDYDPQQRGSASDLKSSAWLGS 337


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 175 IVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPAISTSNMTSP 47
           +VS SS      V+    +PS    P  +   P  STSN T+P
Sbjct: 466 VVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTP 508


>AL032648-6|CAC35867.1|  244|Caenorhabditis elegans Hypothetical
           protein Y54G9A.7 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +3

Query: 177 RNFEQVFVKLMR--RYKYL--EKMFEEEMKKVLVYLKGFEPQQRIK 302
           R +++ F K  +  R K L  E+ F++ MK +L  L+ F P++ +K
Sbjct: 127 RRYDRDFFKYQKYHREKKLKSEREFQKRMKSLLTELEAFNPEKYVK 172


>AF303259-1|AAG50217.1|  244|Caenorhabditis elegans 2O16 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +3

Query: 177 RNFEQVFVKLMR--RYKYL--EKMFEEEMKKVLVYLKGFEPQQRIK 302
           R +++ F K  +  R K L  E+ F++ MK +L  L+ F P++ +K
Sbjct: 127 RRYDRDFFKYQKYHREKKLKSEREFQKRMKSLLTELEAFNPEKYVK 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,795,657
Number of Sequences: 27780
Number of extensions: 221486
Number of successful extensions: 820
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)