Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N20
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0350 + 2534422-2535615 31 0.89
01_06_0956 - 33343503-33344086,33344225-33344384 29 3.6
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 28 4.7
01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836... 28 4.7
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781... 28 6.2
05_05_0200 - 23171803-23171906,23172304-23173951 28 6.2
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 28 6.2
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 28 6.2
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841 27 8.2
06_03_0911 + 25889333-25889597,25891464-25892038,25892201-258925... 27 8.2
05_01_0304 - 2392526-2392828 27 8.2
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 27 8.2
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.89
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 547 PWNSNAQAEKKTLPGPLGGVFRP 479
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 257 PSPRQSSRASLEYLLLPPRSAPTEAPGGLAPRPFCALRR 141
PSPR R + + LPP AP +P AP P RR
Sbjct: 135 PSPRHKRRTAPAPMPLPPAQAPVWSP---APAPAATQRR 170
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 260 NPSPRQSSRASLEYLLLPPRSAPTEA---PGGLAPRP 159
NP+P S+ + L PP +AP A PGG A P
Sbjct: 9 NPNPNPSTPFEVSMLFKPPSNAPAAAPIFPGGPAAGP 45
>01_06_0971 -
33483015-33483071,33483282-33483315,33483590-33483684,
33483769-33483843,33483925-33484010,33484256-33484307,
33484381-33484455,33484554-33484620,33485699-33486159
Length = 333
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 272 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPGGLAPRPFCA 150
L R+P+P + R+ L S+PT A AP PF A
Sbjct: 10 LLRRSPTPIPNPRSLLSLDAFLAASSPTAASHATAPAPFAA 50
>12_02_1002 +
25176434-25176501,25176613-25176859,25178106-25178171,
25178754-25178822,25179007-25179080,25180850-25180991,
25181546-25181596,25181769-25181774
Length = 240
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 185 PPSVQILVVVANTPARPW 238
PPS +LV+V P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191
>05_05_0200 - 23171803-23171906,23172304-23173951
Length = 583
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 272 LFTRNP-SPRQSSRASLEYLLLPPRSAPTEAPG 177
LF NP SP +SS AS ++ SAP +PG
Sbjct: 491 LFRSNPGSPYRSSTASPSIFIMESPSAPRRSPG 523
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 474 GLPRRTLAFNTRERLLKRFRCRV 406
G R T + RERLLK FRC +
Sbjct: 480 GAARHTNNLSMRERLLKEFRCSI 502
>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 534 TLRQKRKLFPDLSAASSGHFGLPRRTLAFNTR 439
+LRQ+RK DL GHF L ++ L ++TR
Sbjct: 1105 SLRQRRKYIHDLFQEKPGHFELAQQ-LTYDTR 1135
>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
Length = 348
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 166 GASPPGASVGADLGGSSKYSSEALED 243
G + PGA GA+ GG + Y + A D
Sbjct: 258 GGAAPGAYEGANYGGGNNYMNNATSD 283
>06_03_0911 +
25889333-25889597,25891464-25892038,25892201-25892580,
25892667-25892753,25892812-25893181,25893352-25893762,
25893845-25893904,25894013-25894219
Length = 784
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 130 VGRARRRAQKGLGASPPGASVGADLGGSSKYSSEALE 240
V + + A++ G PGA+ G D G +S+Y E E
Sbjct: 32 VSKVKMTAERRGGEGSPGAAAGKDGGAASEYLIEEEE 68
>05_01_0304 - 2392526-2392828
Length = 100
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 282 RATTVHAKPFSTSVLQGLAG 223
RATTV A+P +T+V G AG
Sbjct: 40 RATTVKARPATTAVAAGFAG 59
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 266 TRNPSPRQSSRASLEYLLLPPRSAPTEAPGGLAPRPFCALRRARPTRYGLMI 111
+R P + SR S ++ PP +P +APG + +P A PT +G+ +
Sbjct: 51 SRVPPLERVSRRS--EVVFPPLDSPFQAPGYRSVQPVSISLPASPTGFGVPV 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,133
Number of Sequences: 37544
Number of extensions: 401026
Number of successful extensions: 1433
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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