Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N19
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 267 4e-72
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 259 1e-69
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 157 8e-39
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 30 1.5
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 29 2.7
02_04_0580 + 24065830-24065967,24066163-24067425 29 2.7
03_06_0022 + 31085819-31086305,31086448-31087334 28 6.2
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 27 8.2
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 267 bits (655), Expect = 4e-72
Identities = 118/189 (62%), Positives = 153/189 (80%)
Frame = +3
Query: 12 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVL 191
IF RA+QY +EY +E++ ++L R+AR +G +YV EAKL FV+RIRG+N + PK RK+L
Sbjct: 47 IFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKIL 106
Query: 192 QLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPI 371
QL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+
Sbjct: 107 QLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPL 166
Query: 372 TSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRRKTIHYVD 551
+N +IE+ L K +IIC+EDL+HEI TVG FK A+NFLWPFKL P GG ++K HYV+
Sbjct: 167 QNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVE 226
Query: 552 GGDFGNRED 578
GGD GNRED
Sbjct: 227 GGDAGNRED 235
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 259 bits (634), Expect = 1e-69
Identities = 117/195 (60%), Positives = 153/195 (78%), Gaps = 6/195 (3%)
Frame = +3
Query: 12 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVL 191
IF RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRG+N + PK RK+L
Sbjct: 46 IFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKIL 105
Query: 192 QLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPI 371
QL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+
Sbjct: 106 QLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPL 165
Query: 372 TSNSLIEKR------LSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRRK 533
T+N +IE+ L K +IIC+EDL+HEI TVG FK A+NFLWPFKL P GG ++K
Sbjct: 166 TNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKK 225
Query: 534 TIHYVDGGDFGNRED 578
HYV+GGD GNRE+
Sbjct: 226 RNHYVEGGDAGNREN 240
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 157 bits (380), Expect = 8e-39
Identities = 80/184 (43%), Positives = 117/184 (63%), Gaps = 3/184 (1%)
Frame = +3
Query: 18 KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGVNQVSPKVRKV 188
KR E +V+E+R KE D +R+ + + R P E +KL F IRI G + P +R++
Sbjct: 50 KRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRI 107
Query: 189 LQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVP 368
L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V++L+YK+G L+ + P
Sbjct: 108 LRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFP 167
Query: 369 ITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRRKTIHYV 548
+TSN LIEK L + IIC+EDL+HEI +VG F+ ASNFL PFKL P + K +
Sbjct: 168 LTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFK 227
Query: 549 DGGD 560
DG +
Sbjct: 228 DGAE 231
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 158 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSL-KDFP 6
D TN +KC G+ A++ ++S QS I +LDA ++ G +DFP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Frame = +3
Query: 117 GEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGY 296
G+ K I +RG + ++ + +L +LR ++ ++N R+ + WG+
Sbjct: 621 GKMKFLEHIGLRGCHSLAELPSSITELPKLRHLSIDE-TKINAIPRGFKRLENLEMLWGF 679
Query: 297 P-------------NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVE 428
P +L+ + L R + + VP +S + + K +K+N+IC+E
Sbjct: 680 PVHIIIENTGEYRCSLEELGPLSKLRKLKLIGLENVPYSSMATLAKLKTKENLICLE 736
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +3
Query: 249 TVNMLRIAE--PYIAWGYPNLKSVRELVYKRG--FAKLNGKRVPITSNSLIEKRLSKQNI 416
T+ +L +A+ P A G+ + E+ + FA NG+ + S + I+ L
Sbjct: 71 TMAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARC 130
Query: 417 ICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG 521
V +L +E+F +S F++P+K+ T G
Sbjct: 131 TIVSELSNEVFD-SYVLSESSLFVYPYKIVIKTCG 164
>03_06_0022 + 31085819-31086305,31086448-31087334
Length = 457
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 572 AVTEVAAVDVVNRLPAPTSSRVVQFEWPQEVTCV 471
A+ V V V L AP +SR+ WP++ TC+
Sbjct: 229 ALALVPNVLPVGPLEAPATSRLAGHFWPEDTTCL 262
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -3
Query: 403 LSLFSMSELEVIGTRFPFSLAKPRLYTNSRTLFKLG*PHAI 281
L L S+ LE + RFP L K + L KL PH I
Sbjct: 310 LKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVI 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,132
Number of Sequences: 37544
Number of extensions: 302342
Number of successful extensions: 876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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