Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N19
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   289   7e-79
Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical ...    27   7.3  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    27   9.6  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    27   9.6  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  289 bits (710), Expect = 7e-79
 Identities = 125/190 (65%), Positives = 161/190 (84%)
 Frame = +3

Query: 9   EIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKV 188
           + FKRAE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRG+NQ+ PK RK 
Sbjct: 45  QYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKA 104

Query: 189 LQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVP 368
           LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK++G RVP
Sbjct: 105 LQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVP 164

Query: 369 ITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRRKTIHYV 548
           IT N+++E+ L K NIIC+EDL HEI TVG  FK A+NFLWPFKLNNPTGGW +KT H+V
Sbjct: 165 ITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFV 224

Query: 549 DGGDFGNRED 578
           +GGDFGNRED
Sbjct: 225 EGGDFGNRED 234


>Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical
           protein F38H4.4 protein.
          Length = 501

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 545 VVNRLPAP-TSSRVVQFEWPQEVTCVLELLTDSKY 444
           ++ +LP P TS+   Q    Q V CVL LLTDS+Y
Sbjct: 264 ILTQLPLPHTSADFWQMIIEQRVKCVLLLLTDSEY 298


>Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical
           protein C17G1.3a protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 402 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRRKTI 539
           +KQ II  ++ + EIF+  EKF   SN +W  +++NP   W    I
Sbjct: 71  AKQIIIDADEEVVEIFSQTEKF--LSN-MWTMEMSNPLMMWMNPRI 113


>Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical
           protein T07C12.8 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -3

Query: 565 PKSPPST**IVFLRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMFCLLS 398
           P SP +   IVFL    +   S + HR   +Y +F PT + S++R ++  +   LS
Sbjct: 100 PLSPTNILSIVFLSPYSLNYLSFSAHRSTFSYCSF-PTGHRSFVRPASANILLPLS 154


>AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical
           protein T01A4.3 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 402 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPT 515
           S+Q+  C    +H +  + ++F +    LW  +++NPT
Sbjct: 361 SRQSTKCDPRSLHTLMGLAQRFGFDYLILWAARIDNPT 398


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -2

Query: 578  VLAVTEVAAVDVVNRLPAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNADDVLFAK 399
            V   TE+  VD +  L   T S  ++F    E+  +    T+ ++ +   L A  VLF  
Sbjct: 921  VNVATELERVDHILPLRYATISHKIEFS--DEIKFIDGSKTNLQWTLSPPLEAGTVLFKV 978

Query: 398  SLLDE*VGGDRDTLPVQFGETAF 330
            S+  E +GG    +     ET F
Sbjct: 979  SIFREKMGGQDPPIITIQSETNF 1001


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -2

Query: 578  VLAVTEVAAVDVVNRLPAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNADDVLFAK 399
            V   TE+  VD +  L   T S  ++F    E+  +    T+ ++ +   L A  VLF  
Sbjct: 921  VNVATELERVDHILPLRYATISHKIEFS--DEIKFIDGSKTNLQWTLSPPLEAGTVLFKV 978

Query: 398  SLLDE*VGGDRDTLPVQFGETAF 330
            S+  E +GG    +     ET F
Sbjct: 979  SIFREKMGGQDPPIITIQSETNF 1001


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,963,641
Number of Sequences: 27780
Number of extensions: 261199
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)