Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N18
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 36 0.004
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 31 0.078
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 31 0.14
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 30 0.24
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 29 0.32
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 27 1.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 1.7
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 1.7
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 25 5.1
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 6.8
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 25 6.8
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 9.0
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 25 9.0
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 9.0
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 35.9 bits (79), Expect = 0.004
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +3
Query: 195 DIFRRVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISFEDF 362
+ F+ DKD +GYI+ +EL L++ + E V MI D GVI++E+F
Sbjct: 89 EAFKVFDKDGNGYITVEELTHVLTS-LGERLSQEEVADMIREADTDGDGVINYEEF 143
Score = 29.1 bits (62), Expect = 0.42
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 418 DSDNSGNIDKNELKTALTDFGYRLSDDVVSTMV 516
D D +G I EL LT G RLS + V+ M+
Sbjct: 95 DKDGNGYITVEELTHVLTSLGERLSQEEVADMI 127
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 31.5 bits (68), Expect = 0.078
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +3
Query: 159 FHSPMPSRDFLWDIFRRVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNR 338
F P ++++++F D D++GYI E ALS + N + + ++D N
Sbjct: 58 FGDPSAFAEYVFNVF---DADKNGYIDFKEFICALSVTSRGELNDKLI-WAFQLYDLDNN 113
Query: 339 GVISFED 359
G+IS+++
Sbjct: 114 GLISYDE 120
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 30.7 bits (66), Expect = 0.14
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 195 DIFRRVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISFEDF 362
+ F+ D D+ I EL+ A+ +N E ++++ FDK +G + EDF
Sbjct: 41 EAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRD-FDKTGKGYLQMEDF 95
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 29.9 bits (64), Expect = 0.24
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 201 FRRVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISFEDF 362
FR DKD SGYI + + + V+LM+ D N G + DF
Sbjct: 84 FRVFDKDNSGYIETAKFADYMKT-LGEKLSDNEVQLMVQEADPTNSGSFDYYDF 136
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 418 DSDNSGNIDKNELKTALTDFGYRLSDDVVSTMV 516
D DNSG I+ + + G +LSD+ V MV
Sbjct: 88 DKDNSGYIETAKFADYMKTLGEKLSDNEVQLMV 120
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 29.5 bits (63), Expect = 0.32
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 418 DSDNSGNIDKNELKTALTDFGYRLSDDVVSTM 513
D D GNI + ++KT LT S+D ++ M
Sbjct: 58 DKDGDGNIGREDVKTMLTSLNQDASEDSINHM 89
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 194 PQEVPAWHWRMESHFLLS*KKRTNVKAKQLLT 99
P+E + H R+ HFLL K V+ K+L +
Sbjct: 571 PEETYSLHRRLSGHFLLCAKLGAKVRCKELFS 602
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 2/16 (12%)
Frame = +2
Query: 86 YNYSV--LAVAWLLHW 127
YNY++ VAWLLHW
Sbjct: 610 YNYNIGKFVVAWLLHW 625
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 415 NGYGKQLCHSVTYFHKAPKSSNDITPLFCLSNIPIISRTVSGLK 284
NG + L H ++ F + ++ N ITP+F + IP+ S L+
Sbjct: 55 NGESEYLQHRISEFLEQLRTEN-ITPIFVFNGIPLTFEASSQLE 97
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2
Query: 53 SNKTPRIPLKFYNYSVLAVAWLLHWFFFF 139
S++ R+ L ++++ + +WFFFF
Sbjct: 53 SSQFRRLKLPYHHHHTFTIEAFFYWFFFF 81
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 230 ATTVFIDSSKNIPQEVPAWHWRMESHFLLS*KKRTNVKAKQLLTLN--NYKILMEFLGFY 57
A + S K PQ AW W H LL + R + + L+ N ++M+ Y
Sbjct: 313 AAVLLEQSVKENPQHFEAWKWLGRIHTLLGNESRVVEALLEAVKLDSTNLDLMMDLAVSY 372
Query: 56 LSK 48
+++
Sbjct: 373 VNQ 375
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 422 LSERIREATLPLCDVLPQS 366
+ E +REA+ PLC +L +S
Sbjct: 1121 IKESVREASFPLCKLLARS 1139
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 427 CRCPNG-YGKQLCHSVTYFHKAPKSSNDITPLFCLSNIPIISR 302
C C YG CH V YF K +SS + L C+ +P R
Sbjct: 292 CMCRRDEYG---CHLVGYFSKEKESSENYN-LACILTLPQYQR 330
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 318 MFDKQNRGVISFEDFGALWKYVTEWQSCFP 407
MFD N GVI +E+ + +Y+ C P
Sbjct: 480 MFDSMNLGVIFYENAPSPQRYMHTAIECIP 509
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = +1
Query: 172 CQAGTSCGIFLEESIKTVVATFRQMNCNK--PCQTEH 276
C G +C E + KT+ F CNK C H
Sbjct: 218 CGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSH 254
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 364 PKSSNDITPLFCLSNIPIISRTVSGLKGFHVP 269
PKSS ++ P+ + + ++ GLK + P
Sbjct: 157 PKSSENLLPILQFDELDVSAKLREGLKNYKEP 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,499
Number of Sequences: 5004
Number of extensions: 49296
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -