Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N17
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 87 1e-18
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 83 2e-17
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 32 0.040
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 27 1.1
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 27 1.1
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 2.6
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 25 4.6
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|... 25 4.6
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 6.1
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 24 8.0
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 24 8.0
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 8.0
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 87.0 bits (206), Expect = 1e-18
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Frame = +2
Query: 11 LVRLTHAPTGRNLHSHRERAPLTTKYMQVTGYGEDGLGDANDVW--KVLISGGNEDD-EI 181
+VRL H T RNLH+H+ APL + +V+GYG +GD D W +L + D +
Sbjct: 407 VVRLIHPFTNRNLHTHKIPAPLNKRMYEVSGYGLGDVGDEKDYWIVNILYDTAHRDAYNV 466
Query: 182 QTVKSKLMFVHYLQACVLTTTGKQLPKWGYEQQEVACNPNLRDKN--ALWNVEDNVYDDL 355
+++ + + + C L+++ LP WG+ Q E+ C+P+ N WNVE+++ L
Sbjct: 467 RSLSTVFQLYNPVVGCYLSSSSSSLPSWGFGQIEMYCDPDPDPSNTDTQWNVEEHINPRL 526
Query: 356 PKVSFEAYASGF 391
P+ S Y S F
Sbjct: 527 PEGSINDYPSSF 538
Score = 31.9 bits (69), Expect = 0.040
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 32 PTGRNLHSHRERAPLTTKYMQVTGYGEDGLGDANDVWKVLISGG 163
PTG LHSH + P ++ QVTGY D N+ W + + G
Sbjct: 348 PTGALLHSHVQTYPEGSEQQQVTGYHHK---DGNNEWMFVPTHG 388
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 82.6 bits (195), Expect = 2e-17
Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 11/144 (7%)
Frame = +2
Query: 11 LVRLTHAPTGRNLHSHRERAPLTTK---YMQVTGYGEDGL-GDANDVWKVLI-----SGG 163
+VRL H TGR LHSH E P+ + ++ + YG G GDAND++++ I
Sbjct: 382 VVRLRHVMTGRALHSH-EHKPIVSNNDWQLEASAYGGFGFEGDANDLFRIQILEKKSKHA 440
Query: 164 NEDDEIQTVKSKLMFVHYLQACVLTTTGKQLPKWGYEQQEVACNPNLRDKNALWNVEDNV 343
+ ++T+ +K +H C L ++ ++ P WG Q+EV C N +++ W +E N
Sbjct: 441 TSNGTVETLNTKFRLIHVFANCELMSSHRRFPDWGDYQREVTCCRNCVERSTTWFIESNY 500
Query: 344 YDDLPKVSFE-AYAS-GFIERLVE 409
+D LP S + Y GF+E VE
Sbjct: 501 HDGLPSDSRKITYRKPGFLESFVE 524
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 31.9 bits (69), Expect = 0.040
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = +2
Query: 8 DLVRLTHAPTGRNLHSHRERAP-------LTTKYMQVTGYGEDGLGDANDVWKVL 151
D+V + H T LHSH E+ P +++ QVTGY D D N+ W +L
Sbjct: 343 DIVTIKHMGTNAFLHSHPEKYPIPYDDGRISSGGQQVTGYQFD---DENNYWMIL 394
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 83 WWSTEPSLDASAGSVQSVRGS-SEPG 9
W++T P LDA + +Q++ S +EPG
Sbjct: 105 WYATSPDLDAFSALIQNLYASPAEPG 130
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 56 HRERAPLTTKYMQVTGYGEDGLGDANDVWKVLISGG 163
H ++PLT + + + G G G+G AN + +++ G
Sbjct: 289 HVTKSPLTEQRIMIFGAGTAGVGIANQIVAGMVTDG 324
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 232 NACLQVMDKH*FALDRLDFIVLVAAGDQYFPDIVGVTKPVL 110
NACL+V+++ LD+L+ ++ + +Q D + + K L
Sbjct: 289 NACLKVLEECLVELDKLEHATVLLSTNQELCDQIEINKKKL 329
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 4.6
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 16 SLDPRTDWTEPALASREGSVDHQVHAGHWVWRGRAW 123
+L+P D A G H H HW W AW
Sbjct: 499 TLNPARDLGPRMFAWWIGYGPHSFHLYHWWWTWGAW 534
>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 4.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 35 TGRNLHSHRERAPLTTKYMQVTGYGEDGLGDANDVWKVLISGG 163
T RNL SH+++A L K + T + + + LI G
Sbjct: 18 TERNLESHKKQAKLILKRLSPTSEKRASIESGDYTFHYLIDNG 60
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 323 WNVEDNVYDDLPKVSFEAYAS 385
W+ DN+ D LPK+S + + +
Sbjct: 182 WDFNDNIADPLPKLSDDQHGT 202
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 24.2 bits (50), Expect = 8.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 308 PSSWDCRPLPAVRSPISVAAYR*SSKRMPASN 213
PS+ D RP+P+ SPI++ R +R P+ N
Sbjct: 438 PSTPDKRPVPSEVSPIAIFTTR--MERGPSKN 467
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 24.2 bits (50), Expect = 8.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 322 QCVLVPQVGIAGHFLLFVAPFR*LLTGSRQNACLQVMDKH 203
+CV + + GH L A R L R N+C Q+++++
Sbjct: 353 ECVPLGTIEANGHPDLLPALIRALGRAKRLNSCFQLLERY 392
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 8.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 50 HSHRERAPLTTKYMQVTGYGEDG 118
HS RE+ + KY+ + GY DG
Sbjct: 305 HSIREQCQMYIKYLSLIGYLFDG 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,880
Number of Sequences: 5004
Number of extensions: 34643
Number of successful extensions: 102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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