Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_N17
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0809 - 21426670-21426753,21427188-21427317,21427403-214274... 52 2e-07
01_06_1479 + 37657525-37657878,37658075-37658254,37658703-376588... 30 0.63
03_04_0004 + 16234648-16234731,16235178-16235237,16235598-162356... 28 2.5
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 28 3.3
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679... 27 5.8
01_01_0095 + 733307-734060,734779-734802,735029-736098 27 5.8
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 27 7.7
08_01_0777 - 7542478-7544988 27 7.7
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 27 7.7
07_03_0015 - 12447947-12448393 27 7.7
02_05_0020 + 25070664-25070692,25070934-25071513,25071605-250718... 27 7.7
>08_02_0809 -
21426670-21426753,21427188-21427317,21427403-21427452,
21428209-21428349,21428907-21429047,21429144-21429251
Length = 217
Score = 52.0 bits (119), Expect = 2e-07
Identities = 33/112 (29%), Positives = 53/112 (47%)
Frame = +2
Query: 11 LVRLTHAPTGRNLHSHRERAPLTTKYMQVTGYGEDGLGDANDVWKVLISGGNEDDEIQTV 190
++RL H T + LHSH +PL+ ++V+ +G DG D D W++ I GG ++
Sbjct: 104 IIRLQHMRTRKWLHSHLHASPLSGN-LEVSCFGGDGQSDTGDYWRLEIEGGG---KLWKQ 159
Query: 191 KSKLMFVHYLQACVLTTTGKQLPKWGYEQQEVACNPNLRDKNALWNVEDNVY 346
K+ H L + K+ + G QQEV C + +W + VY
Sbjct: 160 DQKVRLRHVDTGGYLHSHNKKYNRLGGGQQEV-CGVREKRAENIWLATEGVY 210
>01_06_1479 +
37657525-37657878,37658075-37658254,37658703-37658831,
37658936-37659084,37659245-37659383,37659969-37660274
Length = 418
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 243 PVSSYRNGATNSRKWPAIPT*G--TRTHCGMSRITSMT 350
PV+ R GA SRKW +P G R G +I MT
Sbjct: 14 PVTGRRKGAAASRKWMVVPAVGEERRVEFGKHQIMKMT 51
>03_04_0004 +
16234648-16234731,16235178-16235237,16235598-16235627,
16235859-16235909,16235978-16236076,16236410-16236469,
16236534-16236623,16237011-16237112,16237195-16237305,
16237952-16238068,16238153-16238233,16239089-16239169,
16239798-16239875,16239949-16240088,16240205-16240304,
16240836-16240954,16241152-16241287,16241371-16241501,
16242222-16242298,16242451-16242562,16242638-16242693,
16243724-16243839,16245538-16245622,16245703-16245806,
16246469-16246597,16246888-16246938
Length = 799
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 56 HRERAPLTTKYMQVTGYGEDGLGDANDVWKVLISGGNEDDEIQTVKSKL 202
+ +R LTTK +++ GY + G G V + SG + +D I KS L
Sbjct: 335 YAQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 383
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 101 GYGEDGLGDANDVWKVLISGG 163
GYG D +GD N V ++++S G
Sbjct: 892 GYGGDSIGDRNKVERIVMSSG 912
>09_03_0082 +
12166464-12166526,12167350-12167376,12167921-12167993,
12168517-12168773
Length = 139
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 183 KRSRAN*CLSITCRHAF*RLPVSSYRNGATNSRKWPAIPT*GTRTHCGMSR 335
+R R++ S C HAF V+ G++ S P + THCG +R
Sbjct: 71 QRPRSSYSSSSPCPHAFTTSTVAPSHPGSSGSVDPPVTGMLDSGTHCGATR 121
>01_01_0095 + 733307-734060,734779-734802,735029-736098
Length = 615
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 317 RSCPSSWDCRPLPAVRSPISVAAYR*SSKRMPASNGQTLVCS*P 186
R+CP SW P +R P + + SS +++ L CS P
Sbjct: 12 RNCPPSWCSDSGPEIRFPHQLESSNSSSSSSCSASCARLACSGP 55
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 26 HAPTGRNLHSHRERAPLTTKYMQVTGYGEDGLGDANDV 139
H PT RNL H +AP +T+ V + D D+
Sbjct: 3254 HPPTVRNLPEHETQAPASTQSASVEASDKAKSTDQEDM 3291
>08_01_0777 - 7542478-7544988
Length = 836
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = +2
Query: 302 LRDKNA-LWNVEDNVYDDLP--KVSFEA 376
LR K+A LWN+E N D LP K+S++A
Sbjct: 377 LRIKDANLWNIEQNKCDILPALKLSYDA 404
>07_03_0797 +
21575948-21576042,21576140-21576902,21577134-21577327,
21577667-21577700,21578421-21578485,21579032-21579524
Length = 547
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 352 IVIDVILDIPQCVLVPQVGIAG 287
+ +DVI D+ Q V+ P+ G+AG
Sbjct: 297 VQVDVIHDVHQNVVAPKAGVAG 318
>07_03_0015 - 12447947-12448393
Length = 148
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -2
Query: 122 QARPRHTQ*PACT--WWSTEPS 63
+ARPR T P C WW +EP+
Sbjct: 32 EARPRATLPPRCRRWWWRSEPT 53
>02_05_0020 +
25070664-25070692,25070934-25071513,25071605-25071817,
25071918-25072207,25072301-25072412,25072539-25072763,
25072853-25073464
Length = 686
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 277 LFVAPFR*LLTGSRQNACLQV 215
LFV P LTG+RQN C+++
Sbjct: 111 LFVDPLFLYLTGTRQNMCIEL 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,010
Number of Sequences: 37544
Number of extensions: 261552
Number of successful extensions: 758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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