Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_N17
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-14|AAC17034.1|  206|Caenorhabditis elegans Hypothetical...    61   3e-10
Z81475-8|CAL90887.1|  676|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z81475-7|CAB03914.2|  653|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z72503-4|CAA96595.1|  354|Caenorhabditis elegans Hypothetical pr...    28   3.0  
M38251-1|AAA28059.1|  354|Caenorhabditis elegans G-o protein alp...    28   3.0  
AY008140-1|AAG32093.1|  354|Caenorhabditis elegans heterotrimeri...    28   3.0  
U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine rece...    27   5.3  
U80448-2|AAB37816.1|  321|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   7.0  
AF022967-7|AAB69877.1|  485|Caenorhabditis elegans Hypothetical ...    26   9.2  

>AF067219-14|AAC17034.1|  206|Caenorhabditis elegans Hypothetical
           protein R12E2.13 protein.
          Length = 206

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 34/113 (30%), Positives = 61/113 (53%)
 Frame = +2

Query: 8   DLVRLTHAPTGRNLHSHRERAPLTTKYMQVTGYGEDGLGDANDVWKVLISGGNEDDEIQT 187
           D +RL H  TG  LHSH   APL+ ++ +V+ +G +   D  D W V+ +G   D+ +++
Sbjct: 92  DKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVICNG---DEWLES 148

Query: 188 VKSKLMFVHYLQACVLTTTGKQLPKWGYEQQEVACNPNLRDKNALWNVEDNVY 346
            + KL   H +    L+ +G+Q  +  + Q+EV    ++   +A W V + +Y
Sbjct: 149 EQFKLR--HAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGGSA-WKVAEGIY 198


>Z81475-8|CAL90887.1|  676|Caenorhabditis elegans Hypothetical
           protein C24H11.8b protein.
          Length = 676

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 379 VRFETHFR*IVIDVILDIPQCVLVPQVGIAGHFLLFVA--PFR*LLTGSRQNACLQVMD 209
           ++F T  +   I  I  +  C LV    +AG F+      P+   L G  +NA L+V+D
Sbjct: 10  LKFTTFVKSATIFTITHVGLCFLVALYAVAGAFMFQAVEYPYELGLQGKVKNASLKVVD 68


>Z81475-7|CAB03914.2|  653|Caenorhabditis elegans Hypothetical
           protein C24H11.8a protein.
          Length = 653

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 379 VRFETHFR*IVIDVILDIPQCVLVPQVGIAGHFLLFVA--PFR*LLTGSRQNACLQVMD 209
           ++F T  +   I  I  +  C LV    +AG F+      P+   L G  +NA L+V+D
Sbjct: 10  LKFTTFVKSATIFTITHVGLCFLVALYAVAGAFMFQAVEYPYELGLQGKVKNASLKVVD 68


>Z72503-4|CAA96595.1|  354|Caenorhabditis elegans Hypothetical
           protein C26C6.2 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 53  SHRERAPLTTKYMQVTGYGEDGLGDANDVWKVLISGGNEDDEIQTVKSKLMFVH 214
           S  ERA L    M      EDG+  A D+ K+L+ G  E  +  T+  ++  +H
Sbjct: 6   SQEERAALERSRMIEKNLKEDGMQAAKDI-KLLLLGAGESGK-STIVKQMKIIH 57


>M38251-1|AAA28059.1|  354|Caenorhabditis elegans G-o protein alpha
           subunit protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 53  SHRERAPLTTKYMQVTGYGEDGLGDANDVWKVLISGGNEDDEIQTVKSKLMFVH 214
           S  ERA L    M      EDG+  A D+ K+L+ G  E  +  T+  ++  +H
Sbjct: 6   SQEERAALERSRMIEKNLKEDGMQAAKDI-KLLLLGAGESGK-STIVKQMKIIH 57


>AY008140-1|AAG32093.1|  354|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 53  SHRERAPLTTKYMQVTGYGEDGLGDANDVWKVLISGGNEDDEIQTVKSKLMFVH 214
           S  ERA L    M      EDG+  A D+ K+L+ G  E  +  T+  ++  +H
Sbjct: 6   SQEERAALERSRMIEKNLKEDGMQAAKDI-KLLLLGAGESGK-STIVKQMKIIH 57


>U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein11 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 192 LTVWISSSSLPPEINTFQTSLAXXXXXXXXPVTCMY 85
           + +W+S+ +LPPE+  +   +A         +T +Y
Sbjct: 168 MELWLSNPNLPPEVTCYSCIIAVLDDYVMYIITVIY 203


>U80448-2|AAB37816.1|  321|Caenorhabditis elegans Hypothetical
           protein F59A3.4 protein.
          Length = 321

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 387 PDAYASKLTFGKSS*TLSSTFHSAF-LSLKLGLQ 289
           P+  A  + FG +  T  +TF SAF L++ +GLQ
Sbjct: 186 PEGLAVGVGFGSAGKTKQATFESAFNLAIGIGLQ 219


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 143 KVLISGGNEDDEIQTVKS-KLMFVHYLQACVLTTTGKQLPKWGYEQQEVACNPNLRDKNA 319
           ++ +SGG++ D+   + + +   V+ L A +  TT    P    +  +V   PN   K A
Sbjct: 426 RIEVSGGSDYDQPSNIPANEQATVNELLATLDNTT----PASNLDFNQVTVEPNTNQKPA 481

Query: 320 LWNVEDNVYDDLP 358
           +   E + YD  P
Sbjct: 482 IIQTEGDDYDTAP 494


>AF022967-7|AAB69877.1|  485|Caenorhabditis elegans Hypothetical
           protein C13A2.5 protein.
          Length = 485

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 107 GEDGLGDANDVWKVLISGGNE---DDEIQTVKSKLMFVHYLQACVLTTTGKQLPKWGY 271
           G+DG  D + +WK      NE   D++++ +++ +  +  + A      G +LP   Y
Sbjct: 359 GKDGPSDVHQLWKFEFGPFNETIQDNDVEALENDIWRIRNISA--FAQLGSRLPNTDY 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,848,607
Number of Sequences: 27780
Number of extensions: 200330
Number of successful extensions: 543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)